Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 1.5e-211 739.2 360 100.0
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 1.1e-172 610.1 366 83.1
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 1.9e-113 413.3 333 62.5
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 1.2e-112 410.6 338 60.7
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 2.1e-112 409.8 343 58.0
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.1e-112 409.8 356 59.6
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 8.0e-112 407.9 356 59.0
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 8.0e-112 407.9 353 57.5
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.0e-111 407.5 357 59.4
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 1.2e-110 404.1 354 57.3
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 1.5e-110 403.7 337 59.3
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 2.0e-110 403.3 346 59.0
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 2.6e-110 402.9 335 59.4
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 3.4e-110 402.5 345 58.3
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 4.4e-110 402.1 359 57.4
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 5.7e-110 401.7 357 57.7
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 2.2e-109 399.8 355 56.3
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 1.4e-108 397.1 338 60.1
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 1.4e-108 397.1 370 55.1
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 1.8e-108 396.7 337 57.6
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 3.2e-108 396.0 365 55.3
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 4.1e-108 395.6 360 55.3
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 5.4e-108 395.2 357 55.5
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 5.4e-108 395.2 334 57.5
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 5.4e-108 395.2 336 58.0
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 7.0e-108 394.8 360 55.0
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 2.0e-107 393.3 342 55.8
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 2.7e-107 392.9 363 55.6
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 2.7e-107 392.9 363 55.6
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 3.5e-107 392.5 350 55.1
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 3.5e-107 392.5 334 57.2
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 4.6e-107 392.1 360 55.3
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.6e-107 392.1 348 58.3
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 4.6e-107 392.1 351 55.0
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 5.9e-107 391.7 331 58.6
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.9e-107 391.7 339 59.3
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 1.3e-106 390.6 356 55.3
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 2.3e-106 389.8 357 56.9
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 2.9e-106 389.4 335 56.1
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 2.9e-106 389.4 338 57.1
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 2.9e-106 389.4 343 58.0
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 2.9e-106 389.4 354 55.9
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 3.9e-106 389.0 356 54.8
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 5.0e-106 388.7 336 57.1
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 5.0e-106 388.7 336 57.7
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 6.6e-106 388.3 359 55.4
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 8.6e-106 387.9 371 52.6
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 8.6e-106 387.9 359 54.9
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 1.1e-105 387.5 342 57.0
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 3.3e-105 386.0 366 54.6
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 3.3e-105 386.0 338 58.0
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 3.3e-105 386.0 337 57.9
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 9.5e-105 384.4 339 57.2
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 2.8e-104 382.9 343 55.7
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 2.8e-104 382.9 338 56.5
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 3.6e-104 382.5 345 55.1
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.7e-104 382.1 363 54.3
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 1.8e-103 380.2 344 55.5
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 2.3e-103 379.8 335 58.5
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 2.3e-103 379.8 362 54.1
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 2.3e-103 379.8 374 53.2
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 3.1e-103 379.4 360 53.9
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 1.2e-102 377.5 361 54.6
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 1.2e-102 377.5 344 54.1
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.5e-102 377.1 360 53.3
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.5e-102 377.1 333 57.7
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 5.8e-102 375.2 337 55.8
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 7.5e-102 374.8 399 49.9
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 1.7e-101 373.6 340 55.9
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 2.9e-101 372.9 399 49.6
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 2.4e-100 369.8 351 53.8
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 5.4e-100 368.6 343 53.9
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 1.0e-98 364.4 339 54.9
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.0e-98 362.1 338 55.0
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 9.5e-97 357.8 412 48.1
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.8e-96 356.3 285 59.6
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.8e-95 353.6 318 54.7
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 3.1e-95 352.8 333 52.0
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 4.9e-93 345.5 349 50.4
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.9e-92 343.6 334 53.0
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.9e-92 343.6 334 53.0
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 2.4e-92 343.2 321 52.6
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 3.5e-91 339.3 351 50.4
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 2.0e-86 323.6 338 48.5
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 3.4e-86 322.8 292 56.5
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 1.3e-85 320.9 296 56.1
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 6.0e-83 312.0 288 53.5
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 1.0e-82 311.2 296 53.4
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 1.3e-82 310.8 356 48.0
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 6.6e-82 308.5 292 54.5
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 3.0e-74 283.1 293 48.8
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.2e-70 271.2 252 53.2
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.7e-67 260.0 289 49.8
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 1.3e-50 204.5 159 60.4
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 4.8e-48 196.1 259 42.5
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 6.3e-48 195.7 334 38.6
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 4.1e-47 193.0 162 56.8
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 2.2e-45 187.2 198 49.0
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 1.9e-41 174.1 132 60.6
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.3e-40 171.4 304 37.2
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 9.0e-39 165.2 120 65.0
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 6.1e-35 152.5 301 36.5
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 3.3e-33 146.7 286 35.3
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 1.4e-31 141.4 114 64.0
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 7.9e-27 125.6 503 25.2
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.3e-24 118.2 72 69.4
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 2.9e-13 80.5 62 66.1
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.0e-13 79.7 81 48.1
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 8.5e-13 79.0 43 79.1
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 1.9e-12 77.8 40 80.0
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 1.5e-09 68.2 179 30.7
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 5.7e-09 66.2 79 44.3
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 9.8e-09 65.5 101 37.6
Cre16.g694201 Chlamydomonas reinhardtii HOM05D009332 ORTHO05D044261 3.7e-08 63.5 217 28.6
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 1.4e-07 61.6 144 29.9
MCO06G041 Micromonas commoda HOM05D004978 ORTHO05D005621 5.4e-07 59.7 148 31.1
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 9.1e-07 58.9 144 28.5
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.6e-06 58.2 83 38.6
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 2.0e-06 57.8 280 22.5
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 3.5e-06 57.0 281 22.4
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 3.5e-06 57.0 32 68.8
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 3.5e-06 57.0 290 22.1
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 7.7e-06 55.8 294 23.5


User provided reference genes

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