Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.7e-133 478.0 266 100.0
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 4.3e-86 322.0 267 71.5
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.9e-38 163.7 266 44.7
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.9e-38 163.7 265 45.3
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.8e-36 157.1 242 45.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 9.7e-30 134.8 247 38.9
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 2.4e-28 130.2 263 37.3
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 2.0e-27 127.1 194 41.8
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 2.6e-27 126.7 199 43.2
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.9e-27 125.6 193 42.0
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 3.8e-26 122.9 191 41.9
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 5.5e-25 119.0 193 36.8
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.4e-25 118.2 265 36.6
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-24 117.9 257 38.1
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.2e-24 117.9 196 41.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 2.7e-24 116.7 193 37.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 7.9e-24 115.2 259 35.9
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.9e-24 115.2 196 40.8
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.3e-23 113.6 267 35.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 3.0e-23 113.2 267 34.8
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 6.7e-23 112.1 258 34.1
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 8.8e-23 111.7 263 34.6
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.5e-22 110.9 264 35.6
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.5e-22 110.9 193 37.3
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 2.6e-22 110.2 263 35.0
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 2.6e-22 110.2 192 38.0
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 2.6e-22 110.2 261 33.3
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 3.3e-22 109.8 263 34.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 4.4e-22 109.4 210 34.3
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 5.7e-22 109.0 196 37.8
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 7.4e-22 108.6 265 32.8
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 1.3e-21 107.8 192 39.6
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.3e-21 107.8 194 38.7
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 8.2e-21 105.1 192 36.5
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.1e-20 104.8 193 36.8
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.4e-20 104.4 193 38.9
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.8e-20 104.0 190 37.4
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.4e-20 103.6 198 38.4
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.1e-20 103.2 261 32.6
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.1e-20 103.2 268 34.7
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.1e-20 102.8 190 36.8
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 4.1e-20 102.8 271 33.6
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.1e-20 102.8 257 35.8
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 6.9e-20 102.1 222 35.1
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 9.1e-20 101.7 258 33.7
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 9.1e-20 101.7 262 35.1
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.2e-19 101.3 197 38.1
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.5e-19 100.9 257 36.2
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.0e-19 100.5 193 35.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.4e-19 99.8 192 41.1
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 4.5e-19 99.4 261 32.6
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 5.9e-19 99.0 194 36.6
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 5.9e-19 99.0 197 38.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.9e-19 99.0 265 35.1
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 5.9e-19 99.0 196 34.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.0e-18 98.2 261 35.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.0e-18 98.2 263 33.8
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.3e-18 97.8 191 36.1
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.3e-18 97.8 245 32.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.3e-18 97.8 191 34.6
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.3e-18 97.8 197 37.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.7e-18 97.4 263 30.8
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.7e-18 97.4 263 31.2
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.7e-18 97.4 272 33.1
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 2.2e-18 97.1 191 36.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.9e-18 96.7 261 32.2
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.8e-18 96.3 188 34.6
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 3.8e-18 96.3 194 34.5
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.8e-18 96.3 265 32.8
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 3.8e-18 96.3 264 33.7
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 6.5e-18 95.5 267 31.8
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.5e-18 95.1 268 33.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 8.5e-18 95.1 192 35.4
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.1e-17 94.7 268 35.1
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.4e-17 94.4 256 34.4
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.9e-17 94.0 242 31.8
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 2.5e-17 93.6 188 33.5
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.5e-17 93.6 197 36.5
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 3.2e-17 93.2 193 36.8
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 9.4e-17 91.7 257 31.9
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.2e-16 91.3 194 34.5
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.2e-16 91.3 255 33.7
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.6e-16 89.7 197 32.0
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.6e-16 89.7 191 34.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.7e-16 89.4 128 44.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.7e-16 89.4 268 34.7
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 8.0e-16 88.6 191 33.0
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.8e-15 87.4 197 31.0
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 3.0e-15 86.7 194 36.6
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 3.0e-15 86.7 255 32.9
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.9e-15 86.3 255 32.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 8.8e-15 85.1 259 32.0
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.1e-14 84.7 140 38.6
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.0e-14 84.0 193 34.2
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.6e-14 83.6 193 34.7
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 3.3e-14 83.2 192 34.9
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 3.3e-14 83.2 142 35.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.3e-14 83.2 259 30.1
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 4.4e-14 82.8 192 34.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 5.7e-14 82.4 265 31.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.4e-14 82.0 157 36.3
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 7.4e-14 82.0 236 33.5
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 7.4e-14 82.0 225 35.1
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 7.4e-14 82.0 268 29.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.7e-14 81.6 276 30.8
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.3e-13 81.3 263 31.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.7e-13 79.7 266 30.1
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 4.8e-13 79.3 199 32.2
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.4e-12 77.8 195 32.3
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.8e-12 77.4 122 41.8
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 5.3e-12 75.9 269 30.5
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 9.1e-12 75.1 248 29.8
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.7e-10 70.9 262 29.8
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.2e-10 70.5 191 27.7
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 8.5e-10 68.6 253 26.5
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 8.5e-10 68.6 253 26.5
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.5e-09 67.8 194 28.4
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.9e-09 67.4 226 27.4
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 3.2e-09 66.6 202 27.7
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 5.5e-09 65.9 193 27.5
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 5.5e-09 65.9 196 30.6
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 9.4e-09 65.1 119 33.6
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-07 61.2 91 42.9
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 5.2e-07 59.3 197 29.4
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 6.7e-07 58.9 272 27.6
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.2e-06 58.2 197 25.9
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 2.0e-06 57.4 205 26.8
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 5.7e-06 55.8 247 25.5


User provided reference genes

Program Settings