Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.2e-74 284.6 427 100.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.9e-37 159.5 102 76.5
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.5e-35 154.8 101 74.3
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.2e-31 141.0 92 70.7
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 8.0e-26 122.5 92 60.9
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.9e-20 104.0 91 52.7
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 8.5e-20 102.4 82 57.3
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 8.5e-20 102.4 92 52.2
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.1e-19 102.1 82 54.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.5e-19 101.7 82 56.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.9e-19 101.3 90 54.4
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.9e-19 101.3 98 49.0
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.9e-19 101.3 91 53.8
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.9e-19 101.3 91 51.6
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 4.2e-19 100.1 91 52.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 4.2e-19 100.1 91 52.7
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 5.5e-19 99.8 82 56.1
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 9.4e-19 99.0 91 48.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 9.4e-19 99.0 91 50.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 9.4e-19 99.0 91 51.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 9.4e-19 99.0 91 50.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 9.4e-19 99.0 101 50.5
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.2e-18 98.6 91 53.8
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.6e-18 98.2 91 50.5
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.6e-18 98.2 97 51.5
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.1e-18 97.8 91 49.5
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 2.1e-18 97.8 100 45.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.1e-18 97.8 91 49.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.7e-18 97.4 91 51.6
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.7e-18 97.4 91 51.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 3.6e-18 97.1 91 51.6
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.6e-18 97.1 91 50.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.6e-18 97.1 91 51.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 4.7e-18 96.7 91 49.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.7e-18 96.7 100 45.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 6.1e-18 96.3 92 50.0
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.1e-18 96.3 91 49.5
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 6.1e-18 96.3 94 52.1
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 8.0e-18 95.9 98 48.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 8.0e-18 95.9 98 48.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.0e-18 95.9 82 54.9
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.4e-17 95.1 82 52.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.4e-17 95.1 91 50.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.4e-17 95.1 82 52.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.8e-17 94.7 91 47.3
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.3e-17 94.4 86 50.0
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 3.0e-17 94.0 82 52.4
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 3.0e-17 94.0 82 51.2
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 3.0e-17 94.0 82 51.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 3.0e-17 94.0 82 51.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 3.0e-17 94.0 82 53.7
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.0e-17 93.6 91 48.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.0e-17 93.6 91 48.4
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 4.0e-17 93.6 91 48.4
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 4.0e-17 93.6 85 49.4
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.2e-17 93.2 91 50.5
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.8e-17 92.8 91 47.3
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 6.8e-17 92.8 91 49.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 6.8e-17 92.8 94 46.8
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-16 92.0 82 53.7
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.2e-16 92.0 94 45.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.2e-16 92.0 94 50.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.5e-16 91.7 104 43.3
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.5e-16 91.7 91 51.6
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.5e-16 91.7 87 52.9
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-16 91.3 82 50.0
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.0e-16 91.3 82 50.0
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.0e-16 91.3 91 47.3
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.6e-16 90.9 91 50.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 3.4e-16 90.5 91 47.3
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 4.4e-16 90.1 92 47.8
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.4e-16 90.1 86 53.5
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 4.4e-16 90.1 94 46.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.7e-16 89.7 91 49.5
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.7e-16 89.7 84 50.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 7.5e-16 89.4 91 48.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.8e-16 89.0 91 47.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 9.8e-16 89.0 82 51.2
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.3e-15 88.6 89 44.9
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.3e-15 88.6 89 46.1
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.3e-15 88.6 91 48.4
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.3e-15 88.6 91 48.4
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.2e-15 87.8 91 49.5
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.2e-15 87.8 91 48.4
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.8e-15 87.4 85 45.9
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.3e-15 86.3 68 58.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 6.3e-15 86.3 91 44.0
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 8.3e-15 85.9 85 44.7
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.4e-14 85.1 91 46.2
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.4e-14 85.1 90 46.7
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.8e-14 84.7 67 59.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-14 84.7 90 46.7
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 3.1e-14 84.0 91 45.1
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 3.1e-14 84.0 91 47.3
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.4e-14 83.2 90 45.6
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 5.4e-14 83.2 87 49.4
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 9.1e-14 82.4 72 55.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.2e-13 82.0 87 47.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-13 81.3 82 45.1
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.7e-13 80.9 80 48.8
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 4.5e-13 80.1 88 45.5
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 7.7e-13 79.3 90 44.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 7.7e-13 79.3 75 53.3
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.0e-12 79.0 84 48.8
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.0e-12 79.0 68 57.4
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.7e-12 78.2 73 52.1
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.3e-12 77.8 70 55.7
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.9e-12 77.4 90 42.2
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 3.8e-12 77.0 64 56.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 3.8e-12 77.0 68 52.9
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 5.0e-12 76.6 89 47.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.6e-12 75.9 66 53.0
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-11 75.1 91 44.0
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.5e-11 74.3 79 44.3
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.5e-11 72.4 80 46.2
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.2e-10 72.0 57 61.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.1e-10 71.2 80 45.0
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.8e-10 70.9 76 52.6
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.6e-10 70.5 95 41.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.6e-10 70.5 95 41.1
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.8e-09 68.2 79 41.8
HPP92_004365 Vanilla planifolia HOM05D002513 ORTHO05D002720 3.0e-09 67.4 41 75.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.0e-08 64.7 80 42.5
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-08 64.3 57 56.1
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.6e-08 64.3 83 47.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.6e-08 64.3 53 60.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 7.5e-08 62.8 70 50.0
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 7.5e-08 62.8 77 44.2
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.3e-07 62.0 65 50.8
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.3e-07 62.0 69 43.5
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.7e-07 61.6 87 43.7
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.2e-07 61.2 80 41.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.9e-07 60.8 67 46.3
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.9e-07 60.1 53 56.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.3e-07 59.7 53 58.5
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.1e-06 58.9 64 45.3
HPP92_016208 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.1e-06 58.9 46 65.2
HPP92_016602 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.1e-06 58.9 43 62.8
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-06 58.5 47 55.3
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.4e-06 58.5 78 35.9
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 5.4e-06 56.6 81 44.4
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 7.0e-06 56.2 51 49.0
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 9.2e-06 55.8 67 44.8
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 9.2e-06 55.8 59 42.4


User provided reference genes

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