Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.1e-62 241.5 113 100.0
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 6.4e-15 84.3 46 78.3
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.2e-13 80.1 45 77.8
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.6e-13 79.7 46 73.9
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.6e-10 69.7 47 61.7
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.1e-10 69.3 46 63.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.1e-10 69.3 46 63.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.6e-10 68.6 58 55.2
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.6e-10 68.6 47 59.6
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 4.7e-10 68.2 47 59.6
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.7e-10 68.2 47 59.6
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 8.1e-10 67.4 45 60.0
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.4e-09 66.6 46 63.0
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.4e-09 66.6 47 59.6
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.8e-09 66.2 46 58.7
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.8e-09 66.2 45 60.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.3e-09 65.9 46 60.9
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 2.3e-09 65.9 46 58.7
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.3e-09 65.9 60 51.7
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.1e-09 65.5 46 58.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 3.1e-09 65.5 46 60.9
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 3.1e-09 65.5 46 60.9
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 3.1e-09 65.5 46 58.7
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 4.0e-09 65.1 46 58.7
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 4.0e-09 65.1 60 51.7
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 5.2e-09 64.7 46 60.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 6.8e-09 64.3 46 58.7
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 8.9e-09 63.9 45 64.4
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 8.9e-09 63.9 46 58.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-08 63.5 47 57.4
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-08 63.5 47 57.4
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.2e-08 63.5 45 64.4
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.5e-08 63.2 45 62.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.0e-08 62.8 46 58.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.0e-08 62.8 46 54.3
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.0e-08 62.8 46 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.6e-08 62.4 61 50.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.6e-08 62.4 45 64.4
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.6e-08 62.4 45 62.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.6e-08 62.4 45 55.6
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.6e-08 62.4 46 58.7
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.4e-08 62.0 59 50.8
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 3.4e-08 62.0 46 58.7
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.4e-08 61.6 45 60.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.4e-08 61.6 45 60.0
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.4e-08 61.6 45 57.8
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 4.4e-08 61.6 46 54.3
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.4e-08 61.6 46 58.7
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 5.8e-08 61.2 46 58.7
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 5.8e-08 61.2 46 56.5
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 5.8e-08 61.2 45 60.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 5.8e-08 61.2 46 60.9
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.8e-08 61.2 50 54.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 5.8e-08 61.2 50 54.0
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.8e-08 61.2 46 60.9
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 5.8e-08 61.2 47 59.6
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 5.8e-08 61.2 47 59.6
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 5.8e-08 61.2 47 59.6
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 7.5e-08 60.8 45 62.2
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.5e-08 60.8 46 58.7
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 7.5e-08 60.8 46 56.5
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 7.5e-08 60.8 45 57.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 9.9e-08 60.5 45 62.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 9.9e-08 60.5 45 62.2
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 9.9e-08 60.5 45 55.6
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.9e-08 60.5 46 52.2
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 9.9e-08 60.5 45 57.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 9.9e-08 60.5 46 56.5
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 9.9e-08 60.5 46 54.3
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-07 60.1 45 57.8
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-07 60.1 45 57.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.3e-07 60.1 46 56.5
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.2e-07 59.3 46 56.5
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.2e-07 59.3 46 54.3
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.9e-07 58.9 46 56.5
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.7e-07 58.5 45 57.8
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.9e-07 58.2 45 60.0
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 4.9e-07 58.2 61 49.2
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 6.4e-07 57.8 71 42.3
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 6.4e-07 57.8 45 57.8
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.4e-07 57.8 46 50.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.4e-07 57.8 46 50.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.3e-07 57.4 46 50.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.3e-07 57.4 46 50.0
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.3e-07 57.4 45 55.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.3e-07 57.4 45 55.6
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 8.3e-07 57.4 45 55.6
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 8.3e-07 57.4 44 56.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.3e-07 57.4 46 56.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.1e-06 57.0 45 60.0
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.1e-06 57.0 45 60.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.1e-06 57.0 45 55.6
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.1e-06 57.0 50 48.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-06 57.0 46 54.3
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-06 57.0 46 54.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.1e-06 57.0 45 55.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.4e-06 56.6 59 47.5
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.4e-06 56.6 46 50.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.9e-06 56.2 46 58.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.4e-06 55.8 45 57.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 3.2e-06 55.5 46 52.2
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 3.2e-06 55.5 46 50.0
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 4.1e-06 55.1 45 53.3
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 7.1e-06 54.3 46 54.3


User provided reference genes

Program Settings