Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 3.1e-260 901.4 487 100.0
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 9.5e-225 783.5 497 86.1
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 3.2e-156 555.8 493 67.5
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 3.2e-156 555.8 499 66.1
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 2.1e-155 553.1 497 66.6
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 3.9e-154 548.9 497 64.8
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 5.7e-153 545.0 497 65.4
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 7.4e-153 544.7 493 65.3
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 1.7e-152 543.5 500 64.0
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.1e-151 540.8 502 64.9
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 1.1e-151 540.8 505 64.6
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 3.1e-151 539.3 494 64.6
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 3.1e-151 539.3 497 65.0
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 1.2e-150 537.3 482 65.4
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 1.2e-150 537.3 496 62.5
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 2.6e-150 536.2 500 63.8
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 2.6e-150 536.2 499 64.7
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 3.4e-150 535.8 499 64.7
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 1.7e-149 533.5 496 65.5
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 1.7e-149 533.5 515 63.3
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 1.7e-149 533.5 507 64.9
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 3.8e-149 532.3 490 63.7
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 3.8e-149 532.3 498 63.7
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 3.8e-149 532.3 500 64.8
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 8.5e-149 531.2 495 63.2
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 4.2e-148 528.9 503 63.2
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 4.2e-148 528.9 505 63.4
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 4.2e-148 528.9 500 62.2
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 5.5e-148 528.5 497 62.8
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.6e-147 526.9 490 61.6
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 2.7e-147 526.2 516 59.9
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 3.6e-147 525.8 508 64.4
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 7.9e-147 524.6 484 64.7
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 3.9e-146 522.3 498 63.7
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 1.5e-145 520.4 499 64.3
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 1.5e-145 520.4 490 63.3
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 1.5e-145 520.4 504 62.7
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 2.6e-145 519.6 495 61.2
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 2.6e-145 519.6 503 64.2
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 2.6e-145 519.6 537 60.1
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 4.4e-145 518.8 499 62.9
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 7.4e-145 518.1 517 60.0
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 1.7e-144 516.9 495 61.0
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 1.4e-143 513.8 494 61.7
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 5.3e-143 511.9 504 62.3
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 9.1e-143 511.1 505 62.6
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 1.6e-142 510.4 499 61.1
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 4.5e-142 508.8 485 59.8
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 5.9e-142 508.4 516 58.7
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 5.9e-142 508.4 500 61.4
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 5.9e-142 508.4 487 63.0
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 7.7e-142 508.1 498 60.4
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 2.2e-141 506.5 501 62.7
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 2.9e-141 506.1 518 57.7
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 6.5e-141 505.0 500 61.0
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 1.9e-140 503.4 515 57.7
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 2.5e-140 503.1 518 58.1
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 2.5e-140 503.1 516 57.2
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 5.5e-140 501.9 499 61.3
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 1.2e-139 500.7 497 62.0
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 1.6e-139 500.4 500 59.6
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 2.7e-139 499.6 498 61.0
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 3.6e-139 499.2 496 62.3
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 6.1e-139 498.4 499 62.1
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 6.1e-139 498.4 498 63.1
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.0e-138 497.7 499 60.5
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 1.4e-138 497.3 493 60.0
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 4.0e-138 495.7 499 59.5
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 5.2e-138 495.4 498 61.4
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 5.2e-138 495.4 504 61.5
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 8.8e-138 494.6 499 60.3
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 1.2e-137 494.2 519 59.0
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 1.2e-137 494.2 500 60.8
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 1.5e-137 493.8 501 60.1
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 2.0e-137 493.4 504 62.1
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 2.6e-137 493.0 499 61.3
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 2.6e-137 493.0 500 59.4
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 4.4e-137 492.3 499 61.1
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 4.4e-137 492.3 498 61.2
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 5.7e-137 491.9 498 61.2
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 5.7e-137 491.9 491 59.3
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 2.2e-136 490.0 504 59.1
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 2.2e-136 490.0 502 61.2
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 2.8e-136 489.6 502 61.4
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 4.8e-136 488.8 497 61.4
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 6.3e-136 488.4 497 58.6
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 8.2e-136 488.0 498 59.8
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 1.8e-135 486.9 497 60.6
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 1.8e-135 486.9 497 60.6
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 1.8e-135 486.9 497 60.6
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 1.8e-135 486.9 497 60.6
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 1.8e-135 486.9 497 60.6
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 1.8e-135 486.9 498 60.6
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 5.3e-135 485.3 498 60.6
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 9.1e-135 484.6 513 57.3
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 1.2e-134 484.2 504 58.9
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 2.7e-134 483.0 515 56.3
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.7e-134 483.0 488 58.6
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 5.9e-134 481.9 509 57.8
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 2.9e-133 479.6 499 59.1
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 9.4e-132 474.6 510 55.3
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 2.1e-131 473.4 488 60.7
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 2.7e-131 473.0 502 60.0
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 2.7e-131 473.0 502 60.0
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 2.3e-130 469.9 511 54.6
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 1.2e-129 467.6 495 57.4
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 1.7e-128 463.8 510 55.3
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 1.4e-127 460.7 521 54.9
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 3.5e-126 456.1 504 55.6
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.0e-125 454.5 471 57.7
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.8e-122 443.7 556 49.6
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 9.8e-121 438.0 518 54.8
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.0e-117 427.9 446 55.8
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 3.5e-102 376.3 222 85.1
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 1.3e-101 374.4 514 46.9
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 6.6e-101 372.1 516 50.6
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 3.3e-100 369.8 508 48.6
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 3.0e-93 346.7 493 47.7
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 5.3e-74 282.7 241 58.5
vmacro17936 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 1.4e-71 274.6 158 86.1
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 3.2e-71 273.5 362 53.9
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 1.8e-69 267.7 200 69.0
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 2.5e-68 263.8 557 36.6
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 4.3e-68 263.1 343 55.1
CDE05G0314 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.4e-66 258.1 157 79.6
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 5.8e-65 252.7 338 52.1
SHI23027 Sapria himalayana HOM05D003435 ORTHO05D004032 6.4e-64 249.2 169 75.7
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 5.6e-60 236.1 331 48.6
GSVIVG01004485001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.4e-58 231.5 157 75.2
BcaC09g50042 Brassica carinata HOM05D003435 ORTHO05D004032 1.3e-40 171.8 135 66.7
C01p29660 Brassica napus HOM05D003435 ORTHO05D004032 3.8e-40 170.2 205 50.2
BolC1t02908H Brassica oleracea HOM05D003435 ORTHO05D004032 3.8e-40 170.2 205 50.2
SHI23026 Sapria himalayana HOM05D003435 ORTHO05D004032 5.5e-39 166.4 357 39.8
GSVIVG01002902001 Vitis vinifera HOM05D003435 ORTHO05D004032 4.8e-27 126.7 104 70.2
EL10Ac2g02709 Beta vulgaris HOM05D003435 ORTHO05D004032 5.3e-26 123.2 186 44.1
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.4e-21 108.6 160 45.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 7.2e-15 86.3 62 74.2
HPP92_006266 Vanilla planifolia HOM05D003435 ORTHO05D004032 6.1e-14 83.2 113 46.0
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.4e-10 72.0 52 65.4
Mapoly0072s0002 Marchantia polymorpha HOM05D003435 ORTHO05D004032 4.1e-10 70.5 57 57.9
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 3.5e-09 67.4 55 69.1
Cre08.g366150 Chlamydomonas reinhardtii HOM05D003435 ORTHO05D004032 2.5e-07 61.2 171 32.2


User provided reference genes

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