Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.0e-81 306.6 150 100.0
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 7.5e-64 247.3 139 79.9
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.2e-58 229.9 139 74.8
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 2.4e-54 215.7 129 72.1
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.2e-53 213.4 132 69.7
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.2e-53 213.4 129 72.9
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.1e-53 212.6 129 70.5
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-53 212.2 129 69.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.6e-53 211.5 129 71.3
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.0e-52 210.3 132 69.7
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 8.6e-52 207.2 129 69.8
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.6e-52 207.2 129 69.0
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.5e-51 205.7 130 67.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.5e-51 205.7 129 69.0
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 4.3e-51 204.9 136 66.9
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 5.6e-51 204.5 132 65.9
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.3e-51 204.1 129 68.2
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 9.6e-51 203.8 129 67.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.2e-50 203.4 131 66.4
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.6e-50 203.0 129 69.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.1e-50 202.6 129 68.2
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-50 202.6 129 66.7
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.8e-50 202.2 129 67.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.6e-50 201.8 131 65.6
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.7e-50 201.4 128 68.8
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 4.7e-50 201.4 129 69.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.2e-50 201.1 128 69.5
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 6.2e-50 201.1 132 66.7
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 8.1e-50 200.7 133 65.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 8.1e-50 200.7 129 68.2
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 8.1e-50 200.7 129 66.7
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.1e-49 200.3 129 68.2
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.4e-49 199.9 129 69.0
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 1.8e-49 199.5 129 64.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 2.4e-49 199.1 132 66.7
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.4e-49 199.1 135 67.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.1e-49 198.7 129 64.3
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 3.1e-49 198.7 129 65.1
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 4.0e-49 198.4 129 67.4
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 4.0e-49 198.4 132 65.9
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.0e-49 198.4 129 67.4
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 4.0e-49 198.4 132 65.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 5.2e-49 198.0 132 65.2
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 5.2e-49 198.0 129 66.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 5.2e-49 198.0 129 65.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.9e-49 197.6 129 67.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 6.9e-49 197.6 132 65.9
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.9e-49 197.6 129 65.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 6.9e-49 197.6 134 64.2
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 6.9e-49 197.6 129 65.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.9e-49 197.6 122 67.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 6.9e-49 197.6 132 67.4
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 9.0e-49 197.2 129 69.0
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 9.0e-49 197.2 129 68.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 9.0e-49 197.2 129 65.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.2e-48 196.8 128 65.6
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.5e-48 196.4 129 64.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.5e-48 196.4 128 64.8
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.0e-48 196.1 129 66.7
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-48 196.1 132 66.7
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.0e-48 196.1 129 65.1
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.6e-48 195.7 133 64.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.4e-48 195.3 132 65.9
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 3.4e-48 195.3 128 64.8
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.4e-48 195.3 127 66.1
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 4.4e-48 194.9 124 66.1
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 4.4e-48 194.9 129 64.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 4.4e-48 194.9 128 64.8
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 5.8e-48 194.5 129 64.3
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 5.8e-48 194.5 129 64.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.6e-48 194.1 128 67.2
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 7.6e-48 194.1 129 65.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 7.6e-48 194.1 129 63.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 7.6e-48 194.1 132 64.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 9.9e-48 193.7 129 63.6
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 9.9e-48 193.7 129 62.8
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 9.9e-48 193.7 129 65.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.9e-48 193.7 128 64.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 9.9e-48 193.7 129 63.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.3e-47 193.4 129 65.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.7e-47 193.0 129 64.3
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.7e-47 193.0 129 64.3
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.7e-47 193.0 129 63.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.7e-47 193.0 129 63.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.7e-47 193.0 129 65.1
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.7e-47 193.0 109 79.8
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.2e-47 192.6 129 62.8
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.9e-47 192.2 128 64.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.9e-47 192.2 129 63.6
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.9e-47 192.2 129 63.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.8e-47 191.8 129 62.0
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 4.9e-47 191.4 128 61.7
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.9e-47 191.4 128 61.7
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.9e-47 191.4 116 69.8
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 4.9e-47 191.4 129 63.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 4.9e-47 191.4 137 62.0
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 8.4e-47 190.7 129 65.9
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 8.4e-47 190.7 128 62.5
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.1e-46 190.3 131 63.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.1e-46 190.3 128 64.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.9e-46 189.5 122 66.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.9e-46 189.5 130 62.3
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.9e-46 189.5 135 62.2
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.4e-46 189.1 128 63.3
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.2e-46 188.7 129 63.6
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 3.2e-46 188.7 121 67.8
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 7.1e-46 187.6 105 78.1
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.2e-45 186.8 128 63.3
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.2e-45 186.8 129 61.2
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.6e-45 184.9 117 69.2
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 6.0e-45 184.5 129 62.8
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.0e-45 184.5 129 63.6
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-44 183.3 128 60.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.7e-44 183.0 116 68.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 3.0e-44 182.2 128 60.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.9e-44 181.8 130 63.8
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 6.6e-44 181.0 129 62.0
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.5e-43 179.9 119 66.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.5e-43 179.1 117 65.8
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-43 179.1 129 61.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.3e-43 178.7 122 62.3
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 4.3e-43 178.3 117 67.5
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.1e-42 176.0 116 66.4
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.8e-42 175.6 129 62.0
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.1e-41 173.7 129 60.5
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.4e-41 172.6 117 63.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 5.3e-41 171.4 129 60.5
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.0e-41 170.6 129 60.5
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.4e-40 168.7 116 63.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.8e-39 165.2 106 66.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 6.4e-39 164.5 116 62.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-38 163.7 164 48.2
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-36 156.0 129 51.2
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.9e-36 155.2 116 61.2
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-35 153.7 114 61.4
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-34 149.8 129 52.7
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.3e-33 144.8 116 56.9
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 5.3e-33 144.8 99 65.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 9.0e-33 144.1 133 54.1
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.5e-29 132.1 146 45.2
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.0e-28 130.6 97 60.8
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.8e-28 129.8 85 65.9
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.8e-28 129.8 96 62.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.3e-25 118.2 75 69.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 4.5e-24 115.2 80 68.8
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.3e-22 107.5 69 66.7
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-19 99.4 106 46.2
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 2.5e-19 99.4 74 62.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-18 97.1 63 68.3
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.9e-17 91.3 73 56.2


User provided reference genes

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