Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0394100 Oryza sativa ssp. japonica HOM05D006535 ORTHO05D008548 3.1e-266 921.4 515 100.0
Zm00001eb099100 Zea mays HOM05D006535 ORTHO05D008548 1.0e-221 773.5 515 80.4
RcHm_v2.0_Chr5g0002321 Rosa chinensis HOM05D006535 ORTHO05D008548 2.6e-164 582.8 466 64.6
QL05p072061 Quercus lobata HOM05D006535 ORTHO05D008548 6.4e-163 578.2 471 63.1
MD05G1351700 Malus domestica HOM05D006535 ORTHO05D008548 1.6e-161 573.5 471 63.3
FvH4_3g01470 Fragaria vesca HOM05D006535 ORTHO05D008548 2.7e-161 572.8 522 58.8
TAR626G0131 Trochodendron aralioides HOM05D006535 ORTHO05D008548 3.9e-160 568.9 472 62.7
Nn1g07251 Nelumbo nucifera HOM05D006535 ORTHO05D008548 2.5e-159 566.2 472 61.7
GSVIVG01012659001 Vitis vinifera HOM05D006535 ORTHO05D008548 3.3e-159 565.8 472 61.7
HPP92_010356 Vanilla planifolia HOM05D006535 ORTHO05D008548 5.6e-159 565.1 473 63.0
CiPaw.09G097300 Carya illinoinensis HOM05D006535 ORTHO05D008548 7.3e-159 564.7 522 58.2
MELO3C021729.2 Cucumis melo HOM05D006535 ORTHO05D008548 9.6e-159 564.3 470 62.1
Duzib235G1465 Durio zibethinus HOM05D006535 ORTHO05D008548 9.6e-159 564.3 534 56.4
AUR62012752 Chenopodium quinoa HOM05D006535 ORTHO05D008548 2.8e-158 562.8 472 62.3
PSO541G2423 Papaver somniferum HOM05D006535 ORTHO05D008548 2.8e-158 562.8 533 57.8
CANSAT56G3727 Cannabis sativa HOM05D006535 ORTHO05D008548 3.6e-158 562.4 470 61.9
Sed0002831 Sechium edule HOM05D006535 ORTHO05D008548 6.2e-158 561.6 469 61.6
Cfa000168 Carpinus fangiana HOM05D006535 ORTHO05D008548 8.1e-158 561.2 516 58.3
Aqoxy1G03005 Aquilegia oxysepala HOM05D006535 ORTHO05D008548 1.1e-157 560.8 468 62.8
Haze_06851 Corylus avellana HOM05D006535 ORTHO05D008548 2.4e-157 559.7 519 58.0
Glyma.15G111500 Glycine max HOM05D006535 ORTHO05D008548 2.4e-157 559.7 533 55.3
Thecc.06G227200 Theobroma cacao HOM05D006535 ORTHO05D008548 3.1e-157 559.3 529 56.7
CsaV3_1G046130 Cucumis sativus L. HOM05D006535 ORTHO05D008548 4.0e-157 558.9 470 61.5
Phvul.006G146200 Phaseolus vulgaris HOM05D006535 ORTHO05D008548 5.3e-157 558.5 473 61.3
VMungo0540G1326 Vigna mungo HOM05D006535 ORTHO05D008548 6.9e-157 558.1 471 61.1
Sc05g0009420 Simmondsia chinensis HOM05D006535 ORTHO05D008548 2.0e-156 556.6 472 61.0
COL.COLO4_37574 Corchorus olitorius HOM05D006535 ORTHO05D008548 2.6e-156 556.2 531 55.6
Eucgr.E03992 Eucalyptus grandis HOM05D006535 ORTHO05D008548 7.6e-156 554.7 470 60.9
Glyma.09G007100 Glycine max HOM05D006535 ORTHO05D008548 7.6e-156 554.7 472 60.2
Gohir.A10G011200 Gossypium hirsutum HOM05D006535 ORTHO05D008548 9.9e-156 554.3 471 61.4
Hund23439 Selenicereus undatus HOM05D006535 ORTHO05D008548 1.7e-155 553.5 466 62.4
PGR042G2820 Punica granatum HOM05D006535 ORTHO05D008548 3.8e-155 552.4 470 61.1
Dinv13934 Davidia involucrata HOM05D006535 ORTHO05D008548 4.9e-155 552.0 518 56.4
ClCG01G009650 Citrullus lanatus HOM05D006535 ORTHO05D008548 8.4e-155 551.2 472 61.0
Hma1.2p1_1358F.1_g277940 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 1.1e-154 550.8 519 57.2
TWI38G0380 Tripterygium wilfordii HOM05D006535 ORTHO05D008548 1.1e-154 550.8 471 61.1
Gorai.011G011900 Gossypium raimondii HOM05D006535 ORTHO05D008548 1.4e-154 550.4 470 61.3
Gohir.D10G010800 Gossypium hirsutum HOM05D006535 ORTHO05D008548 1.9e-154 550.1 470 61.3
AUR62021906 Chenopodium quinoa HOM05D006535 ORTHO05D008548 1.2e-153 547.4 469 61.2
BcaC01g04564 Brassica carinata HOM05D006535 ORTHO05D008548 6.0e-153 545.0 525 54.5
Lj6g0003188 Lotus japonicus HOM05D006535 ORTHO05D008548 6.0e-153 545.0 526 56.3
Medtr2g024310 Medicago truncatula HOM05D006535 ORTHO05D008548 6.0e-153 545.0 470 59.8
ATR0686G032 Amborella trichopoda HOM05D006535 ORTHO05D008548 1.0e-152 544.3 476 60.5
THA.LOC104812977 Tarenaya hassleriana HOM05D006535 ORTHO05D008548 1.3e-152 543.9 536 54.5
Ca_00689_v3 Cicer arietinum L. HOM05D006535 ORTHO05D008548 3.0e-152 542.7 467 59.3
AT4G04320 Arabidopsis thaliana HOM05D006535 ORTHO05D008548 6.6e-152 541.6 524 55.2
Migut.H01587 Erythranthe guttata HOM05D006535 ORTHO05D008548 6.6e-152 541.6 528 55.5
A03p29930 Brassica napus HOM05D006535 ORTHO05D008548 1.1e-151 540.8 525 53.9
Potri.004G005500 Populus trichocarpa HOM05D006535 ORTHO05D008548 1.1e-151 540.8 456 61.0
Rhsim02G0105100 Rhododendron simsii HOM05D006535 ORTHO05D008548 1.5e-151 540.4 528 54.5
Actinidia11871 Actinidia chinensis HOM05D006535 ORTHO05D008548 5.6e-151 538.5 465 61.1
Psat1g177760 Pisum sativum HOM05D006535 ORTHO05D008548 5.6e-151 538.5 450 61.3
Cc09_g01280 Coffea canephora HOM05D006535 ORTHO05D008548 7.3e-151 538.1 523 55.8
Carub.0006s3215 Capsella rubella HOM05D006535 ORTHO05D008548 1.6e-150 537.0 465 59.4
Potri.011G010400 Populus trichocarpa HOM05D006535 ORTHO05D008548 1.6e-150 537.0 455 60.4
AL6G47860 Arabidopsis lyrata HOM05D006535 ORTHO05D008548 2.1e-150 536.6 465 59.4
Lalb_Chr18g0056581 Lupinus albus HOM05D006535 ORTHO05D008548 2.1e-150 536.6 529 54.4
ECA248G3623 Erigeron canadensis HOM05D006535 ORTHO05D008548 8.1e-150 534.6 470 59.6
MSTRG.14630 Avicennia marina HOM05D006535 ORTHO05D008548 4.0e-149 532.3 524 54.0
CARHR253140 Cardamine hirsuta HOM05D006535 ORTHO05D008548 5.3e-149 531.9 529 54.4
Ah.09g234560 Amaranthus hybridus HOM05D006535 ORTHO05D008548 4.5e-148 528.9 476 59.0
HanXRQChr01g0006511 Helianthus annuus HOM05D006535 ORTHO05D008548 1.3e-147 527.3 521 54.5
Sp6g04530 Schrenkiella parvula HOM05D006535 ORTHO05D008548 1.3e-147 527.3 465 58.1
Thhalv10028619m.g Eutrema salsugineum HOM05D006535 ORTHO05D008548 1.7e-147 526.9 482 56.0
Lsat_1_v5_gn_1_129581 Lactuca sativa HOM05D006535 ORTHO05D008548 1.7e-147 526.9 521 54.7
vmacro15802 Vaccinium macrocarpon HOM05D006535 ORTHO05D008548 2.9e-147 526.2 500 56.0
Ciclev10015047m.g Citrus clementina HOM05D006535 ORTHO05D008548 3.8e-147 525.8 491 58.0
BcaB01g02601 Brassica carinata HOM05D006535 ORTHO05D008548 8.4e-147 524.6 525 53.5
CAN.G23.21 Capsicum annuum HOM05D006535 ORTHO05D008548 1.2e-145 520.8 470 57.7
EL10Ac8g20123 Beta vulgaris HOM05D006535 ORTHO05D008548 1.0e-144 517.7 418 63.9
DCAR_024986 Daucus carota HOM05D006535 ORTHO05D008548 5.6e-143 511.9 461 56.8
Aa31LG9G9880 Aethionema arabicum HOM05D006535 ORTHO05D008548 7.4e-143 511.5 465 57.4
C03p36220 Brassica napus HOM05D006535 ORTHO05D008548 2.1e-142 510.0 525 52.2
unitig_61.g26097 Utricularia gibba HOM05D006535 ORTHO05D008548 2.8e-142 509.6 458 57.4
BolC3t15931H Brassica oleracea HOM05D006535 ORTHO05D008548 4.8e-142 508.8 525 52.0
BraA03t12182Z Brassica rapa HOM05D006535 ORTHO05D008548 6.2e-142 508.4 525 51.8
arahy.Tifrunner.gnm1.ann1.H9DKU3 Arachis hypogaea HOM05D006535 ORTHO05D008548 1.1e-141 507.7 544 52.4
FAN21G0938 Fragaria x ananassa HOM05D006535 ORTHO05D008548 4.0e-141 505.8 534 53.4
SEGI_21824 Sequoiadendron giganteum HOM05D006535 ORTHO05D008548 9.0e-141 504.6 456 57.2
CDE06G1909 Ceratophyllum demersum HOM05D006535 ORTHO05D008548 2.1e-137 493.4 457 55.4
arahy.Tifrunner.gnm1.ann1.P3I999 Arachis hypogaea HOM05D006535 ORTHO05D008548 3.3e-135 486.1 540 51.5
Prupe.I000100 Prunus persica HOM05D006535 ORTHO05D008548 4.3e-135 485.7 410 61.7
Oeu049693.4 Olea europaea HOM05D006535 ORTHO05D008548 2.4e-133 479.9 529 50.7
Nitab4.5_0002668g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 3.2e-130 469.5 471 53.9
Mapoly0112s0027 Marchantia polymorpha HOM05D006535 ORTHO05D008548 4.2e-122 442.6 451 52.1
FAN25G2414 Fragaria x ananassa HOM05D006535 ORTHO05D008548 2.0e-119 433.7 535 49.2
Manes.17G027900 Manihot esculenta HOM05D006535 ORTHO05D008548 6.3e-118 428.7 468 51.3
SMO367G0626 Selaginella moellendorffii HOM05D000208 ORTHO05D008548 3.1e-117 426.4 467 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3852 Anthoceros agrestis HOM05D006535 ORTHO05D008548 5.3e-117 425.6 450 51.8
Pp3c1_9420 Physcomitrium patens HOM05D006535 ORTHO05D008548 1.2e-116 424.5 461 49.0
Hma1.2p1_1358F.1_g277950 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 1.7e-110 404.1 340 61.8
Lj1C1235T17 Lonicera japonica HOM05D006535 ORTHO05D008548 1.2e-92 344.7 511 42.3
TPR.G33068 Trifolium pratense HOM05D006535 ORTHO05D008548 2.9e-91 340.1 283 59.4
Nitab4.5_0000005g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 3.6e-89 333.2 344 52.6
Peaxi162Scf00294g01013 Petunia axillaris HOM05D006535 ORTHO05D008548 4.2e-82 309.7 289 55.7
SGA_v2.0_scaffold89G27482 Striga asiatica HOM05D006535 ORTHO05D008548 5.5e-82 309.3 271 59.0
PGSC0003DMG401021462 Solanum tuberosum HOM05D006535 ORTHO05D008548 8.0e-81 305.4 257 61.5
Sabra04G0002800 Salix brachista HOM05D006535 ORTHO05D008548 6.6e-75 285.8 252 59.1
Prupe.4G015900 Prunus persica HOM05D006535 ORTHO05D008548 8.3e-70 268.9 217 63.1
PGSC0003DMG402021462 Solanum tuberosum HOM05D006535 ORTHO05D008548 7.8e-60 235.7 214 56.1
CBR_g2794 Chara braunii HOM05D006535 ORTHO05D008548 4.6e-52 209.9 227 51.1
Cre02.g145200 Chlamydomonas reinhardtii HOM05D006535 ORTHO05D008548 3.9e-43 180.3 428 31.3
Atru.chr10.2274 Acer truncatum HOM05D006535 ORTHO05D008548 1.7e-38 164.9 124 63.7
TPR.G13151 Trifolium pratense HOM05D006535 ORTHO05D008548 3.3e-34 150.6 105 68.6
Cpa.g.c42047 Carica papaya HOM05D006535 ORTHO05D008548 2.3e-27 127.9 80 76.2
Eucgr.E03995 Eucalyptus grandis HOM05D006535 ORTHO05D000824 3.3e-26 124.0 106 56.6
Solyc02g036300.3 Solanum lycopersicum HOM05D006535 ORTHO05D008548 7.4e-26 122.9 109 54.1
BolC9t56193H Brassica oleracea HOM05D006535 ORTHO05D008548 4.8e-25 120.2 302 32.1
CBR_g2795 Chara braunii HOM05D006535 ORTHO05D008548 2.4e-24 117.9 101 52.5
RcHm_v2.0_Chr3g0487171 Rosa chinensis HOM05D006535 ORTHO05D008548 4.5e-23 113.6 133 48.1
Solyc02g036290.4 Solanum lycopersicum HOM05D006535 ORTHO05D008548 7.6e-23 112.8 91 60.4
C09p33590 Brassica napus HOM05D006535 ORTHO05D008548 2.9e-22 110.9 302 30.8
Nitab4.5_0017473g0010 Nicotiana tabacum HOM05D006535 ORTHO05D008548 2.5e-10 71.2 141 33.3
A09p26400 Brassica napus HOM05D006535 ORTHO05D033081 2.2e-09 68.2 80 48.8
BcaC02g09432 Brassica carinata HOM05D006535 ORTHO05D008548 1.3e-06 58.9 33 78.8
BraA09t38215Z Brassica rapa HOM05D006535 ORTHO05D033081 8.5e-06 56.2 157 28.0


User provided reference genes

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