Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 3.8e-42 174.5 91 100.0
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.4e-25 119.4 90 72.2
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.0e-24 114.0 91 70.3
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.6e-19 98.6 85 65.9
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.6e-16 89.4 88 55.7
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 6.3e-13 77.4 81 50.6
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 8.2e-13 77.0 81 51.9
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 8.2e-13 77.0 81 55.6
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.1e-12 76.6 81 53.1
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.1e-12 76.6 76 56.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 1.4e-12 76.3 77 57.1
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.4e-12 76.3 81 51.9
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.4e-12 76.3 60 61.7
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 2.4e-12 75.5 81 53.1
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 2.4e-12 75.5 61 59.0
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.4e-12 75.5 74 55.4
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 3.1e-12 75.1 81 49.4
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 3.1e-12 75.1 81 49.4
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.1e-12 75.1 59 62.7
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.1e-12 74.7 84 51.2
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 4.1e-12 74.7 90 47.8
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 4.1e-12 74.7 59 64.4
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 4.1e-12 74.7 59 62.7
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 5.3e-12 74.3 58 65.5
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 6.9e-12 73.9 84 51.2
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 6.9e-12 73.9 62 58.1
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 6.9e-12 73.9 60 61.7
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 9.1e-12 73.6 81 51.9
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 9.1e-12 73.6 54 64.8
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.2e-11 73.2 81 50.6
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.2e-11 73.2 61 59.0
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.2e-11 73.2 58 62.1
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.2e-11 73.2 81 49.4
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.5e-11 72.8 81 49.4
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.5e-11 72.8 81 49.4
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.0e-11 72.4 58 63.8
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.0e-11 72.4 77 51.9
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.0e-11 72.4 58 63.8
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.0e-11 72.4 59 61.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.0e-11 72.4 82 52.4
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 2.6e-11 72.0 81 49.4
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 2.6e-11 72.0 58 62.1
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.6e-11 72.0 58 63.8
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 3.4e-11 71.6 75 57.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 3.4e-11 71.6 81 51.9
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 3.4e-11 71.6 58 63.8
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.5e-11 71.2 58 58.6
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 4.5e-11 71.2 58 58.6
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 4.5e-11 71.2 81 54.3
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 5.9e-11 70.9 81 49.4
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.9e-11 70.9 58 56.9
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.9e-11 70.9 58 56.9
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 7.7e-11 70.5 54 59.3
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 1.0e-10 70.1 53 62.3
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.0e-10 70.1 58 60.3
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.3e-10 69.7 58 60.3
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-10 69.7 58 60.3
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.3e-10 69.7 58 60.3
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.3e-10 69.7 81 49.4
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.3e-10 69.7 58 58.6
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.3e-10 69.7 62 56.5
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.3e-10 69.7 59 57.6
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.7e-10 69.3 81 48.1
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.7e-10 69.3 62 56.5
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.7e-10 69.3 82 51.2
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 2.2e-10 68.9 85 44.7
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 2.2e-10 68.9 82 52.4
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.2e-10 68.9 60 56.7
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.2e-10 68.9 81 49.4
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.2e-10 68.9 62 56.5
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.2e-10 68.9 58 62.1
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.2e-10 68.9 62 54.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 2.2e-10 68.9 58 58.6
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 2.2e-10 68.9 58 58.6
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.9e-10 68.6 58 60.3
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.9e-10 68.6 58 56.9
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 3.8e-10 68.2 54 59.3
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 3.8e-10 68.2 58 55.2
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 3.8e-10 68.2 78 52.6
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 3.8e-10 68.2 81 48.1
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.8e-10 68.2 57 57.9
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 5.0e-10 67.8 59 57.6
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 5.0e-10 67.8 62 58.1
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.0e-10 67.8 54 61.1
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 6.5e-10 67.4 58 55.2
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 6.5e-10 67.4 81 49.4
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.5e-10 67.4 81 49.4
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 6.5e-10 67.4 81 48.1
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 6.5e-10 67.4 75 50.7
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 6.5e-10 67.4 62 54.8
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 8.5e-10 67.0 56 62.5
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.1e-09 66.6 81 48.1
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.1e-09 66.6 58 60.3
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.1e-09 66.6 58 60.3
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.1e-09 66.6 81 50.6
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.1e-09 66.6 58 56.9
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.4e-09 66.2 58 56.9
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.4e-09 66.2 58 56.9
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.4e-09 66.2 77 50.6
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.5e-09 65.5 77 49.4
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.2e-09 65.1 57 56.1
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 4.2e-09 64.7 81 48.1
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 5.5e-09 64.3 81 48.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 5.5e-09 64.3 47 68.1
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 5.5e-09 64.3 58 56.9
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.5e-09 64.3 76 48.7
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 7.2e-09 63.9 51 58.8
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 7.2e-09 63.9 86 47.7
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 9.4e-09 63.5 90 44.4
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 1.2e-08 63.2 73 50.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 1.2e-08 63.2 84 46.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 1.6e-08 62.8 67 50.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.1e-08 62.4 58 53.4
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.1e-08 62.4 47 59.6
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.1e-08 62.4 47 59.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.1e-08 62.4 58 56.9
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 3.6e-08 61.6 84 46.4
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 4.7e-08 61.2 50 58.0
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 4.7e-08 61.2 80 47.5
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.7e-08 61.2 80 47.5
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.7e-08 61.2 80 47.5
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.1e-08 60.8 80 47.5
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.9e-08 60.5 53 49.1
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.9e-08 60.5 53 49.1
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 7.9e-08 60.5 79 46.8
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.4e-07 59.7 80 46.2
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 1.4e-07 59.7 62 51.6
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.4e-07 59.7 79 46.8
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.4e-07 59.7 47 59.6
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.8e-07 59.3 49 55.1
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.8e-07 59.3 77 46.8
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 2.3e-07 58.9 72 50.0
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 3.0e-07 58.5 46 63.0
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 5.1e-07 57.8 58 50.0
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 2.0e-06 55.8 47 53.2
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 4.4e-06 54.7 47 55.3


User provided reference genes

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