Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0380050 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D002006 2.7e-22 107.8 57 100.0
Zm00001eb311650 Zea mays HOM05D000764 ORTHO05D002006 2.6e-17 91.3 59 86.4
CANSAT80G0687 Cannabis sativa HOM05D000764 ORTHO05D002006 4.3e-12 73.9 58 69.0
EL10Ac5g11221 Beta vulgaris HOM05D000764 ORTHO05D002006 5.7e-12 73.6 58 69.0
Ciclev10019034m.g Citrus clementina HOM05D000764 ORTHO05D002006 5.7e-12 73.6 58 67.2
Peaxi162Scf00119g00129 Petunia axillaris HOM05D000764 ORTHO05D002006 5.7e-12 73.6 58 65.5
TWI15G0023 Tripterygium wilfordii HOM05D000764 ORTHO05D002006 5.7e-12 73.6 58 63.8
Glyma.04G144600 Glycine max HOM05D000764 ORTHO05D002006 1.3e-11 72.4 58 65.5
Glyma.06G208401 Glycine max HOM05D000764 ORTHO05D002006 1.3e-11 72.4 58 65.5
Glyma.15G207200 Glycine max HOM05D000764 ORTHO05D002006 1.3e-11 72.4 58 65.5
VMungo1309G0490 Vigna mungo HOM05D000764 ORTHO05D002006 1.3e-11 72.4 58 67.2
Nitab4.5_0000208g0110 Nicotiana tabacum HOM05D000764 ORTHO05D002006 2.2e-11 71.6 58 65.5
Sc10g0005090 Simmondsia chinensis HOM05D000764 ORTHO05D002006 2.2e-11 71.6 58 63.8
AL6G34220 Arabidopsis lyrata HOM05D000764 ORTHO05D002006 2.8e-11 71.2 58 67.2
BcaNung02626 Brassica carinata HOM05D000764 ORTHO05D002006 2.8e-11 71.2 58 69.0
BolC7t44970H Brassica oleracea HOM05D000764 ORTHO05D002006 2.8e-11 71.2 58 69.0
AUR62032165 Chenopodium quinoa HOM05D000764 ORTHO05D002006 2.8e-11 71.2 58 65.5
COL.COLO4_08306 Corchorus olitorius HOM05D000764 ORTHO05D002006 2.8e-11 71.2 58 63.8
Peaxi162Scf00017g03137 Petunia axillaris HOM05D000764 ORTHO05D002006 2.8e-11 71.2 49 73.5
Phvul.009G191300 Phaseolus vulgaris HOM05D000764 ORTHO05D002006 2.8e-11 71.2 58 67.2
AT5G23050 Arabidopsis thaliana HOM05D000764 ORTHO05D002006 3.7e-11 70.9 58 67.2
arahy.Tifrunner.gnm1.ann1.1KQ3UY Arachis hypogaea HOM05D000764 ORTHO05D002006 3.7e-11 70.9 58 65.5
arahy.Tifrunner.gnm1.ann1.5ZFR0R Arachis hypogaea HOM05D000764 ORTHO05D002006 3.7e-11 70.9 58 65.5
CAN.G982.6 Capsicum annuum HOM05D000764 ORTHO05D002006 3.7e-11 70.9 50 70.0
Medtr2g056120 Medicago truncatula HOM05D000764 ORTHO05D002006 3.7e-11 70.9 58 65.5
Aa31LG11G2550 Aethionema arabicum HOM05D000764 ORTHO05D002006 4.8e-11 70.5 58 65.5
Ah.11g047290 Amaranthus hybridus HOM05D000764 ORTHO05D002006 4.8e-11 70.5 58 65.5
BcaC06g33191 Brassica carinata HOM05D000764 ORTHO05D002006 4.8e-11 70.5 58 67.2
BcaNung05767 Brassica carinata HOM05D000764 ORTHO05D002006 4.8e-11 70.5 58 67.2
RcHm_v2.0_Chr7g0184211 Rosa chinensis HOM05D000764 ORTHO05D002006 4.8e-11 70.5 58 63.8
Migut.D01489 Erythranthe guttata HOM05D000764 ORTHO05D002006 6.3e-11 70.1 58 62.1
MD14G1218900 Malus domestica HOM05D000764 ORTHO05D002006 6.3e-11 70.1 58 63.8
Oeu031927.2 Olea europaea HOM05D000764 ORTHO05D002006 6.3e-11 70.1 58 62.1
Solyc03g114460.3 Solanum lycopersicum HOM05D000764 ORTHO05D002006 6.3e-11 70.1 50 72.0
Sopen03g033560 Solanum pennellii HOM05D000764 ORTHO05D002006 6.3e-11 70.1 50 72.0
CAN.G1385.2 Capsicum annuum HOM05D000764 ORTHO05D002006 8.2e-11 69.7 55 67.3
Lj1g0024379 Lotus japonicus HOM05D000764 ORTHO05D002006 8.2e-11 69.7 58 65.5
Prupe.5G213100 Prunus persica HOM05D000764 ORTHO05D002006 8.2e-11 69.7 58 62.1
Sp2g24070 Schrenkiella parvula HOM05D000764 ORTHO05D002006 8.2e-11 69.7 58 65.5
A03p46460 Brassica napus HOM05D000764 ORTHO05D002006 1.1e-10 69.3 50 74.0
C07p44510 Brassica napus HOM05D000764 ORTHO05D002006 1.1e-10 69.3 50 74.0
BraA03t13772Z Brassica rapa HOM05D000764 ORTHO05D002006 1.1e-10 69.3 50 74.0
Hund02534 Selenicereus undatus HOM05D000764 ORTHO05D002006 1.1e-10 69.3 58 63.8
Solyc12g038400.2 Solanum lycopersicum HOM05D000764 ORTHO05D002006 1.1e-10 69.3 55 67.3
Sopen12g018540 Solanum pennellii HOM05D000764 ORTHO05D002006 1.1e-10 69.3 55 67.3
Hma1.2p1_0340F.1_g130150 Hydrangea macrophylla HOM05D000764 ORTHO05D002006 1.4e-10 68.9 57 68.4
Nitab4.5_0000646g0220 Nicotiana tabacum HOM05D000764 ORTHO05D002006 1.4e-10 68.9 50 70.0
CSS0026474 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D002006 1.8e-10 68.6 58 63.8
CARHR190480 Cardamine hirsuta HOM05D000764 ORTHO05D002006 1.8e-10 68.6 58 65.5
Manes.01G022750 Manihot esculenta HOM05D000764 ORTHO05D002006 1.8e-10 68.6 58 60.3
Cc04_g07810 Coffea canephora HOM05D000764 ORTHO05D002006 2.4e-10 68.2 50 70.0
QL10p022078 Quercus lobata HOM05D000764 ORTHO05D002006 2.4e-10 68.2 57 63.2
Atru.chr9.691 Acer truncatum HOM05D000764 ORTHO05D002006 3.1e-10 67.8 58 60.3
CSS0016953 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D002006 3.1e-10 67.8 58 60.3
Gorai.003G105300 Gossypium raimondii HOM05D000764 ORTHO05D002006 3.1e-10 67.8 58 60.3
Nn3g17642 Nelumbo nucifera HOM05D000764 ORTHO05D002006 3.1e-10 67.8 50 72.0
Rhsim12G0145800 Rhododendron simsii HOM05D000764 ORTHO05D002006 3.1e-10 67.8 58 63.8
BcaC09g49683 Brassica carinata HOM05D000764 ORTHO05D002006 4.1e-10 67.4 50 72.0
C01p33980 Brassica napus HOM05D000764 ORTHO05D002006 4.1e-10 67.4 50 72.0
BolC1t03367H Brassica oleracea HOM05D000764 ORTHO05D002006 4.1e-10 67.4 50 72.0
Carub.0006s2083 Capsella rubella HOM05D000764 ORTHO05D002006 4.1e-10 67.4 58 65.5
Duzib205G1917 Durio zibethinus HOM05D000764 ORTHO05D002006 5.3e-10 67.0 58 62.1
Gohir.D03G100200 Gossypium hirsutum HOM05D000764 ORTHO05D002006 5.3e-10 67.0 58 60.3
PGSC0003DMG402024509 Solanum tuberosum HOM05D000764 ORTHO05D002006 5.3e-10 67.0 50 70.0
THA.LOC104818369 Tarenaya hassleriana HOM05D000764 ORTHO05D002006 5.3e-10 67.0 58 63.8
CDE10G0758 Ceratophyllum demersum HOM05D000764 ORTHO05D002006 6.9e-10 66.6 51 62.7
Ca_02632_v3 Cicer arietinum L. HOM05D000764 ORTHO05D002006 6.9e-10 66.6 55 65.5
Ca_30883_v3 Cicer arietinum L. HOM05D000764 ORTHO05D002006 6.9e-10 66.6 55 65.5
DCAR_015119 Daucus carota HOM05D000764 ORTHO05D002006 6.9e-10 66.6 58 60.3
ECA247G0777 Erigeron canadensis HOM05D000764 ORTHO05D002006 6.9e-10 66.6 56 66.1
Eucgr.K02641 Eucalyptus grandis HOM05D000764 ORTHO05D002006 6.9e-10 66.6 58 63.8
Psat1g027640 Pisum sativum HOM05D000764 ORTHO05D002006 6.9e-10 66.6 58 63.8
TPR.G21309 Trifolium pratense HOM05D000764 ORTHO05D002006 6.9e-10 66.6 56 64.3
Cfa019849 Carpinus fangiana HOM05D000764 ORTHO05D002006 9.1e-10 66.2 53 64.2
Dinv38609 Davidia involucrata HOM05D000764 ORTHO05D002006 9.1e-10 66.2 58 58.6
HPP92_015491 Vanilla planifolia HOM05D000764 ORTHO05D002006 9.1e-10 66.2 47 72.3
GSVIVG01008200001 Vitis vinifera HOM05D000764 ORTHO05D002006 9.1e-10 66.2 58 62.1
Haze_18561 Corylus avellana HOM05D000764 ORTHO05D002006 1.5e-09 65.5 58 60.3
FAN13G0269 Fragaria x ananassa HOM05D000764 ORTHO05D002006 1.5e-09 65.5 50 68.0
unitig_27.g24914 Utricularia gibba HOM05D000764 ORTHO05D002006 1.5e-09 65.5 51 66.7
Cpa.g.sc13.84 Carica papaya HOM05D000764 ORTHO05D002006 2.0e-09 65.1 50 66.0
ECA247G1947 Erigeron canadensis HOM05D000764 ORTHO05D002006 2.0e-09 65.1 58 63.8
FAN18G0456 Fragaria x ananassa HOM05D000764 ORTHO05D002006 2.0e-09 65.1 50 66.0
FAN18G3783 Fragaria x ananassa HOM05D000764 ORTHO05D002006 2.0e-09 65.1 50 66.0
MBI14_g38621_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D002006 2.0e-09 65.1 58 63.8
Potri.015G056000 Populus trichocarpa HOM05D000764 ORTHO05D002006 2.0e-09 65.1 58 56.9
Gohir.A03G073800 Gossypium hirsutum HOM05D000764 ORTHO05D002006 2.6e-09 64.7 58 58.6
Thecc.03G114000 Theobroma cacao HOM05D000764 ORTHO05D002006 2.6e-09 64.7 58 60.3
Haze_18562 Corylus avellana HOM05D000764 ORTHO05D002006 3.4e-09 64.3 50 68.0
Lalb_Chr11g0071871 Lupinus albus HOM05D000764 ORTHO05D002006 3.4e-09 64.3 47 72.3
CANSAT80G0200 Cannabis sativa HOM05D000764 ORTHO05D002006 4.5e-09 63.9 49 67.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.5e-09 63.9 45 75.6
vmacro16464 Vaccinium macrocarpon HOM05D000764 ORTHO05D002006 4.5e-09 63.9 56 64.3
Actinidia35065 Actinidia chinensis HOM05D000764 ORTHO05D002006 5.9e-09 63.5 58 60.3
PSO063G2111 Papaver somniferum HOM05D000764 ORTHO05D002006 5.9e-09 63.5 58 58.6
HanXRQChr02g0043201 Helianthus annuus HOM05D000764 ORTHO05D002006 7.7e-09 63.2 58 62.1
Cfa019850 Carpinus fangiana HOM05D000764 ORTHO05D002006 1.0e-08 62.8 50 66.0
SGA_v2.0_scaffold42G16048 Striga asiatica HOM05D000764 ORTHO05D002006 1.0e-08 62.8 58 58.6
Aqoxy3G03830 Aquilegia oxysepala HOM05D000764 ORTHO05D002006 1.3e-08 62.4 58 62.1
SEGI_29188 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 1.3e-08 62.4 45 71.1
ATR0691G223 Amborella trichopoda HOM05D000764 ORTHO05D002006 1.7e-08 62.0 56 58.9
CiPaw.15G122400 Carya illinoinensis HOM05D000764 ORTHO05D002006 1.7e-08 62.0 58 56.9
Lsat_1_v5_gn_1_15601 Lactuca sativa HOM05D000764 ORTHO05D002006 1.7e-08 62.0 58 60.3
QL01p054033 Quercus lobata HOM05D000764 ORTHO05D002006 1.7e-08 62.0 50 66.0
MELO3C017271.2 Cucumis melo HOM05D000764 ORTHO05D002006 2.9e-08 61.2 53 60.4
Sed0023383 Sechium edule HOM05D000764 ORTHO05D002006 2.9e-08 61.2 53 62.3
ClCG06G015180 Citrullus lanatus HOM05D000764 ORTHO05D002006 5.0e-08 60.5 53 60.4
Dinv36861 Davidia involucrata HOM05D000764 ORTHO05D002006 6.5e-08 60.1 45 68.9
CsaV3_1G003430 Cucumis sativus L. HOM05D000764 ORTHO05D002006 8.5e-08 59.7 53 58.5
Pp3c1_12140 Physcomitrium patens HOM05D000764 ORTHO05D002006 1.4e-07 58.9 60 56.7
Sed0021594 Sechium edule HOM05D000764 ORTHO05D002006 1.4e-07 58.9 47 66.0
Lj9A434T80 Lonicera japonica HOM05D000764 ORTHO05D002006 2.5e-07 58.2 50 60.0
CBR_g28576 Chara braunii HOM05D000764 ORTHO05D002006 5.5e-07 57.0 51 54.9
Eucgr.J01810 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.5e-07 57.0 50 60.0
Eucgr.J01813 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.5e-07 57.0 50 60.0
Eucgr.J01816 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.5e-07 57.0 50 60.0
Eucgr.J01807 Eucalyptus grandis HOM05D000764 ORTHO05D002006 7.2e-07 56.6 50 60.0
Eucgr.L00850 Eucalyptus grandis HOM05D000764 ORTHO05D002006 7.2e-07 56.6 51 58.8
Oeu024284.1 Olea europaea HOM05D000764 ORTHO05D002006 9.4e-07 56.2 50 58.0
AagrBONN_evm.TU.Sc2ySwM_344.2374 Anthoceros agrestis HOM05D000764 ORTHO05D002006 1.2e-06 55.8 48 60.4
Nn2g15811 Nelumbo nucifera HOM05D000764 ORTHO05D002006 1.2e-06 55.8 50 58.0
Eucgr.L01220 Eucalyptus grandis HOM05D000764 ORTHO05D002006 1.6e-06 55.5 50 60.0
Oeu024286.2 Olea europaea HOM05D000764 ORTHO05D002006 1.6e-06 55.5 50 56.0
Eucgr.L00842 Eucalyptus grandis HOM05D000764 ORTHO05D002006 2.1e-06 55.1 50 60.0
Eucgr.L01217 Eucalyptus grandis HOM05D000764 ORTHO05D002006 2.1e-06 55.1 50 60.0
Manes.03G087803 Manihot esculenta HOM05D000764 ORTHO05D002006 2.1e-06 55.1 58 53.4
GSVIVG01025429001 Vitis vinifera HOM05D000764 ORTHO05D002006 2.1e-06 55.1 50 54.0
AL1G63360 Arabidopsis lyrata HOM05D000764 ORTHO05D002006 2.7e-06 54.7 49 57.1
Ciclev10014402m.g Citrus clementina HOM05D000764 ORTHO05D002006 2.7e-06 54.7 50 58.0
COL.COLO4_35026 Corchorus olitorius HOM05D000764 ORTHO05D002006 2.7e-06 54.7 57 56.1
CsaV3_4G023320 Cucumis sativus L. HOM05D000764 ORTHO05D002006 2.7e-06 54.7 49 57.1
Cfa009594 Carpinus fangiana HOM05D000764 ORTHO05D002006 3.6e-06 54.3 58 53.4
ClCG02G024010 Citrullus lanatus HOM05D000764 ORTHO05D002006 3.6e-06 54.3 49 57.1
MELO3C000769.2 Cucumis melo HOM05D000764 ORTHO05D002006 3.6e-06 54.3 49 59.2
MELO3C014682.2 Cucumis melo HOM05D000764 ORTHO05D002006 3.6e-06 54.3 49 57.1
PRCOL_00006374 Prasinoderma coloniale HOM05D000764 ORTHO05D002006 3.6e-06 54.3 45 68.9
Sed0011933 Sechium edule HOM05D000764 ORTHO05D002006 3.6e-06 54.3 49 57.1
THA.LOC104822677 Tarenaya hassleriana HOM05D000764 ORTHO05D002006 3.6e-06 54.3 49 59.2
GSVIVG01025430001 Vitis vinifera HOM05D000764 ORTHO05D002006 3.6e-06 54.3 50 54.0
Haze_22966 Corylus avellana HOM05D000764 ORTHO05D002006 4.7e-06 53.9 58 53.4
Duzib170G0060 Durio zibethinus HOM05D000764 ORTHO05D002006 4.7e-06 53.9 49 57.1
SEGI_07140 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 4.7e-06 53.9 51 56.9
SEGI_14567 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 4.7e-06 53.9 51 56.9
Cc01_g02040 Coffea canephora HOM05D000764 ORTHO05D002006 6.1e-06 53.5 48 58.3
Nitab4.5_0000827g0060 Nicotiana tabacum HOM05D000764 ORTHO05D002006 6.1e-06 53.5 47 61.7
Thecc.09G209100 Theobroma cacao HOM05D000764 ORTHO05D002006 6.1e-06 53.5 49 57.1
TAR636G3372 Trochodendron aralioides HOM05D000764 ORTHO05D002006 6.1e-06 53.5 50 56.0
Aqoxy1G00434 Aquilegia oxysepala HOM05D000764 ORTHO05D002006 7.9e-06 53.1 49 57.1
COL.COLO4_35021 Corchorus olitorius HOM05D000764 ORTHO05D002006 7.9e-06 53.1 49 53.1
Haze_22960 Corylus avellana HOM05D000764 ORTHO05D002006 7.9e-06 53.1 58 53.4
Hma1.2p1_0843F.1_g227270 Hydrangea macrophylla HOM05D000764 ORTHO05D002006 7.9e-06 53.1 50 54.0
Lsat_1_v5_gn_6_51980 Lactuca sativa HOM05D000764 ORTHO05D002006 7.9e-06 53.1 48 56.2
unitig_61.g26332 Utricularia gibba HOM05D000764 ORTHO05D002006 7.9e-06 53.1 57 52.6


User provided reference genes

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