Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0372700 Oryza sativa ssp. japonica HOM05D001394 ORTHO05D001237 8.6e-34 146.4 71 100.0
Zm00001eb311390 Zea mays HOM05D001394 ORTHO05D001237 4.3e-17 90.9 53 84.9
Zm00001eb098730 Zea mays HOM05D001394 ORTHO05D001237 1.1e-15 86.3 53 81.1
Dinv36838 Davidia involucrata HOM05D001394 ORTHO05D001237 3.5e-11 71.2 51 64.7
Dinv36839 Davidia involucrata HOM05D001394 ORTHO05D001237 6.0e-11 70.5 53 66.0
vmacro10448 Vaccinium macrocarpon HOM05D001394 ORTHO05D001237 1.1e-09 66.2 37 75.7
SalBow8G4569 Salvia bowleyana HOM05D001394 ORTHO05D001237 1.9e-09 65.5 42 66.7
SalBow8G5457 Salvia bowleyana HOM05D001394 ORTHO05D001237 1.9e-09 65.5 42 66.7
Aqoxy3G00604 Aquilegia oxysepala HOM05D001394 ORTHO05D001237 2.5e-09 65.1 41 63.4
TAR622G0648 Trochodendron aralioides HOM05D001394 ORTHO05D001237 2.5e-09 65.1 37 75.7
MSTRG.7710 Avicennia marina HOM05D001394 ORTHO05D001237 3.3e-09 64.7 37 73.0
PGR119G0419 Punica granatum HOM05D001394 ORTHO05D001237 3.3e-09 64.7 37 73.0
Actinidia31919 Actinidia chinensis HOM05D001394 ORTHO05D001237 4.3e-09 64.3 46 65.2
DCAR_026691 Daucus carota HOM05D001394 ORTHO05D001237 4.3e-09 64.3 45 60.0
SGA_v2.0_scaffold14G06780 Striga asiatica HOM05D001394 ORTHO05D001237 4.3e-09 64.3 38 73.7
unitig_22.g5557 Utricularia gibba HOM05D001394 ORTHO05D001237 4.3e-09 64.3 37 75.7
Nn4g23605 Nelumbo nucifera HOM05D001394 ORTHO05D001237 5.6e-09 63.9 37 73.0
Rhsim09G0117500 Rhododendron simsii HOM05D001394 ORTHO05D001237 5.6e-09 63.9 37 73.0
FvH4_4g28710 Fragaria vesca HOM05D001394 ORTHO05D001237 9.5e-09 63.2 46 67.4
FAN12G2698 Fragaria x ananassa HOM05D001394 ORTHO05D001237 9.5e-09 63.2 46 67.4
FAN22G0474 Fragaria x ananassa HOM05D001394 ORTHO05D001237 9.5e-09 63.2 46 67.4
Os02g0728300 Oryza sativa ssp. japonica HOM05D001394 ORTHO05D001237 9.5e-09 63.2 54 53.7
Solyc05g010280.3 Solanum lycopersicum HOM05D001394 ORTHO05D001237 9.5e-09 63.2 37 75.7
Sopen05g006050 Solanum pennellii HOM05D001394 ORTHO05D001237 9.5e-09 63.2 37 75.7
PGSC0003DMG400025120 Solanum tuberosum HOM05D001394 ORTHO05D001237 9.5e-09 63.2 37 75.7
Nitab4.5_0010998g0040 Nicotiana tabacum HOM05D001394 ORTHO05D001237 1.2e-08 62.8 37 73.0
vmacro01288 Vaccinium macrocarpon HOM05D001394 ORTHO05D001237 1.2e-08 62.8 37 70.3
CAN.G184.16 Capsicum annuum HOM05D001394 ORTHO05D001237 1.6e-08 62.4 42 66.7
Migut.E00268 Erythranthe guttata HOM05D001394 ORTHO05D001237 1.6e-08 62.4 37 70.3
FAN17G1986 Fragaria x ananassa HOM05D001394 ORTHO05D001237 1.6e-08 62.4 46 67.4
Lj3A1024T76 Lonicera japonica HOM05D001394 ORTHO05D001237 1.6e-08 62.4 37 73.0
PSO478G3498 Papaver somniferum HOM05D001394 ORTHO05D001237 1.6e-08 62.4 45 60.0
TWI31G0484 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 1.6e-08 62.4 37 75.7
Aa31LG2G6800 Aethionema arabicum HOM05D001394 ORTHO05D001237 2.1e-08 62.0 49 57.1
CiPaw.05G119900 Carya illinoinensis HOM05D001394 ORTHO05D001237 2.1e-08 62.0 44 63.6
Zm00001eb253380 Zea mays HOM05D001394 ORTHO05D001237 2.1e-08 62.0 55 50.9
Duzib251G0136 Durio zibethinus HOM05D001394 ORTHO05D001237 2.8e-08 61.6 37 70.3
MD16G1052200 Malus domestica HOM05D001394 ORTHO05D001237 2.8e-08 61.6 49 59.2
Sc04g0007150 Simmondsia chinensis HOM05D001394 ORTHO05D001237 2.8e-08 61.6 45 64.4
Lj6A771G64 Lonicera japonica HOM05D001394 ORTHO05D001237 3.6e-08 61.2 37 70.3
Nn3g17604 Nelumbo nucifera HOM05D001394 ORTHO05D001237 3.6e-08 61.2 41 68.3
unitig_62.g23704 Utricularia gibba HOM05D001394 ORTHO05D001237 3.6e-08 61.2 37 73.0
Zm00001eb183320 Zea mays HOM05D001394 ORTHO05D001237 3.6e-08 61.2 39 69.2
Actinidia18964 Actinidia chinensis HOM05D001394 ORTHO05D001237 4.7e-08 60.8 47 57.4
CSS0032519 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 4.7e-08 60.8 46 60.9
CSS0037600 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 4.7e-08 60.8 46 60.9
Lalb_Chr10g0099421 Lupinus albus HOM05D001394 ORTHO05D001237 4.7e-08 60.8 37 67.6
Rhsim12G0069900 Rhododendron simsii HOM05D001394 ORTHO05D001237 4.7e-08 60.8 37 73.0
A09p62920 Brassica napus HOM05D001394 ORTHO05D001237 6.2e-08 60.5 56 55.4
Dinv15560 Davidia involucrata HOM05D001394 ORTHO05D001237 6.2e-08 60.5 37 70.3
Peaxi162Scf00204g00116 Petunia axillaris HOM05D001394 ORTHO05D001237 6.2e-08 60.5 37 67.6
Zm00001eb245340 Zea mays HOM05D001394 ORTHO05D001237 6.2e-08 60.5 39 69.2
MSTRG.2283 Avicennia marina HOM05D001394 ORTHO05D001237 8.1e-08 60.1 37 70.3
C08p46360 Brassica napus HOM05D001394 ORTHO05D001237 8.1e-08 60.1 44 61.4
BolC8t52185H Brassica oleracea HOM05D001394 ORTHO05D001237 8.1e-08 60.1 44 61.4
Duzib248G0526 Durio zibethinus HOM05D001394 ORTHO05D001237 8.1e-08 60.1 37 67.6
Eucgr.G02399 Eucalyptus grandis HOM05D001394 ORTHO05D001237 8.1e-08 60.1 36 69.4
Gohir.A13G096600 Gossypium hirsutum HOM05D001394 ORTHO05D001237 8.1e-08 60.1 37 67.6
Gohir.D13G089800 Gossypium hirsutum HOM05D001394 ORTHO05D001237 8.1e-08 60.1 37 67.6
Gorai.013G102900 Gossypium raimondii HOM05D001394 ORTHO05D001237 8.1e-08 60.1 37 67.6
Cpa.g.sc53.9 Carica papaya HOM05D001394 ORTHO05D001237 1.1e-07 59.7 37 67.6
Peaxi162Scf00188g00626 Petunia axillaris HOM05D001394 ORTHO05D001237 1.1e-07 59.7 37 70.3
TWI73G1292 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 1.1e-07 59.7 46 58.7
COL.COLO4_27748 Corchorus olitorius HOM05D001394 ORTHO05D001237 1.4e-07 59.3 37 67.6
Nitab4.5_0005310g0020 Nicotiana tabacum HOM05D001394 ORTHO05D001237 1.4e-07 59.3 54 53.7
CSS0013751 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 1.8e-07 58.9 37 67.6
DCAR_030064 Daucus carota HOM05D001394 ORTHO05D001237 1.8e-07 58.9 36 72.2
Eucgr.B03093 Eucalyptus grandis HOM05D001394 ORTHO05D001237 1.8e-07 58.9 36 75.0
PSO782G4193 Papaver somniferum HOM05D001394 ORTHO05D001237 1.8e-07 58.9 41 63.4
Sp1g11960 Schrenkiella parvula HOM05D001394 ORTHO05D001237 1.8e-07 58.9 44 56.8
SGA_v2.0_scaffold59G20642 Striga asiatica HOM05D001394 ORTHO05D001237 1.8e-07 58.9 37 67.6
Actinidia35061 Actinidia chinensis HOM05D001394 ORTHO05D001237 2.4e-07 58.5 36 69.4
MSTRG.13481 Avicennia marina HOM05D001394 ORTHO05D001237 2.4e-07 58.5 36 66.7
BcaB08g34313 Brassica carinata HOM05D001394 ORTHO05D001237 2.4e-07 58.5 44 59.1
Carub.0005s0325 Capsella rubella HOM05D001394 ORTHO05D001237 2.4e-07 58.5 37 64.9
CiPaw.06G096200 Carya illinoinensis HOM05D001394 ORTHO05D001237 2.4e-07 58.5 36 66.7
Nitab4.5_0000149g0120 Nicotiana tabacum HOM05D001394 ORTHO05D001237 2.4e-07 58.5 54 51.9
Atru.chr11.1517 Acer truncatum HOM05D001394 ORTHO05D001237 3.1e-07 58.2 37 64.9
BcaC07g41634 Brassica carinata HOM05D001394 ORTHO05D001237 3.1e-07 58.2 44 59.1
BraA09t41650Z Brassica rapa HOM05D001394 ORTHO05D001237 3.1e-07 58.2 44 59.1
CARHR013900 Cardamine hirsuta HOM05D001394 ORTHO05D001237 3.1e-07 58.2 44 54.5
CARHR013910 Cardamine hirsuta HOM05D001394 ORTHO05D001237 3.1e-07 58.2 44 63.6
CARHR146450 Cardamine hirsuta HOM05D001394 ORTHO05D001237 3.1e-07 58.2 37 64.9
Oeu054578.1 Olea europaea HOM05D001394 ORTHO05D001237 3.1e-07 58.2 37 67.6
TAR374G1302 Trochodendron aralioides HOM05D001394 ORTHO05D001237 3.1e-07 58.2 41 63.4
arahy.Tifrunner.gnm1.ann1.26IG8H Arachis hypogaea HOM05D001394 ORTHO05D001237 4.0e-07 57.8 36 63.9
CDE04G3468 Ceratophyllum demersum HOM05D001394 ORTHO05D001237 4.0e-07 57.8 48 56.2
Thhalv10008348m.g Eutrema salsugineum HOM05D001394 ORTHO05D001237 4.0e-07 57.8 44 56.8
PGR102G1830 Punica granatum HOM05D001394 ORTHO05D001237 4.0e-07 57.8 37 67.6
SGA_v2.0_scaffold16G07848 Striga asiatica HOM05D001394 ORTHO05D001237 4.0e-07 57.8 37 67.6
HPP92_000492 Vanilla planifolia HOM05D001394 ORTHO05D001237 4.0e-07 57.8 37 64.9
Aqoxy3G03798 Aquilegia oxysepala HOM05D001394 ORTHO05D001237 5.2e-07 57.4 59 44.1
AL1G25320 Arabidopsis lyrata HOM05D001394 ORTHO05D001237 5.2e-07 57.4 44 56.8
Carub.0001s1326 Capsella rubella HOM05D001394 ORTHO05D001237 5.2e-07 57.4 44 56.8
ClCG01G007400 Citrullus lanatus HOM05D001394 ORTHO05D001237 5.2e-07 57.4 37 64.9
Ciclev10032604m.g Citrus clementina HOM05D001394 ORTHO05D001237 5.2e-07 57.4 37 64.9
Haze_11838 Corylus avellana HOM05D001394 ORTHO05D001237 5.2e-07 57.4 52 48.1
MELO3C005172.2 Cucumis melo HOM05D001394 ORTHO05D001237 5.2e-07 57.4 37 64.9
CsaV3_5G018870 Cucumis sativus L. HOM05D001394 ORTHO05D001237 5.2e-07 57.4 37 64.9
MBI14_g16234_MAGBIO Magnolia biondii HOM05D001394 ORTHO05D001237 5.2e-07 57.4 46 56.5
PSO063G5292 Papaver somniferum HOM05D001394 ORTHO05D001237 5.2e-07 57.4 37 64.9
THA.LOC104821980 Tarenaya hassleriana HOM05D001394 ORTHO05D001237 5.2e-07 57.4 55 52.7
Aa31LG1G1340 Aethionema arabicum HOM05D001394 ORTHO05D001237 6.8e-07 57.0 41 61.0
arahy.Tifrunner.gnm1.ann1.IGY6G6 Arachis hypogaea HOM05D001394 ORTHO05D001237 6.8e-07 57.0 36 63.9
Medtr5g049240 Medicago truncatula HOM05D001394 ORTHO05D001237 6.8e-07 57.0 46 47.8
Nitab4.5_0002805g0100 Nicotiana tabacum HOM05D001394 ORTHO05D001237 6.8e-07 57.0 55 49.1
Cfa008826 Carpinus fangiana HOM05D001394 ORTHO05D001237 8.9e-07 56.6 42 54.8
Thhalv10004641m.g Eutrema salsugineum HOM05D001394 ORTHO05D001237 8.9e-07 56.6 37 62.2
Lj9A436T75 Lonicera japonica HOM05D001394 ORTHO05D001237 8.9e-07 56.6 45 60.0
Lj2g0008803 Lotus japonicus HOM05D001394 ORTHO05D001237 8.9e-07 56.6 49 55.1
MD13G1053200 Malus domestica HOM05D001394 ORTHO05D001237 8.9e-07 56.6 37 64.9
QL03p047819 Quercus lobata HOM05D001394 ORTHO05D001237 8.9e-07 56.6 37 59.5
SMO196G0284 Selaginella moellendorffii HOM05D001394 ORTHO05D001237 8.9e-07 56.6 46 56.5
Atru.chr9.682 Acer truncatum HOM05D001394 ORTHO05D001237 1.2e-06 56.2 40 62.5
BcaB07g29724 Brassica carinata HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 62.2
A02p33830 Brassica napus HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 62.2
C02p52070 Brassica napus HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 62.2
BolC2t11292H Brassica oleracea HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 62.2
BraA02t08401Z Brassica rapa HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 62.2
Oeu024137.1 Olea europaea HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 67.6
Sp2g14800 Schrenkiella parvula HOM05D001394 ORTHO05D001237 1.2e-06 56.2 37 62.2
Hund25135 Selenicereus undatus HOM05D001394 ORTHO05D001237 1.2e-06 56.2 46 52.2
AT3G25540 Arabidopsis thaliana HOM05D001394 ORTHO05D001237 1.5e-06 55.8 37 62.2
BcaC03g17266 Brassica carinata HOM05D001394 ORTHO05D001237 1.5e-06 55.8 37 62.2
Ciclev10021283m.g Citrus clementina HOM05D001394 ORTHO05D001237 1.5e-06 55.8 45 55.6
COL.COLO4_07846 Corchorus olitorius HOM05D001394 ORTHO05D001237 1.5e-06 55.8 38 60.5
Potri.008G113900 Populus trichocarpa HOM05D001394 ORTHO05D001237 1.5e-06 55.8 37 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2490 Anthoceros agrestis HOM05D001394 ORTHO05D001237 2.0e-06 55.5 47 53.2
AT1G13580 Arabidopsis thaliana HOM05D001394 ORTHO05D001237 2.0e-06 55.5 37 64.9
arahy.Tifrunner.gnm1.ann1.35DV36 Arachis hypogaea HOM05D001394 ORTHO05D001237 2.0e-06 55.5 37 59.5
arahy.Tifrunner.gnm1.ann1.E87HJI Arachis hypogaea HOM05D001394 ORTHO05D001237 2.0e-06 55.5 37 59.5
Glyma.16G091200 Glycine max HOM05D001394 ORTHO05D001237 2.0e-06 55.5 40 57.5
Lalb_Chr16g0391901 Lupinus albus HOM05D001394 ORTHO05D001237 2.0e-06 55.5 44 59.1
Medtr8g069850 Medicago truncatula HOM05D001394 ORTHO05D001237 2.0e-06 55.5 37 62.2
Psat2g101240 Pisum sativum HOM05D001394 ORTHO05D001237 2.0e-06 55.5 37 59.5
Thecc.03G112400 Theobroma cacao HOM05D001394 ORTHO05D001237 2.0e-06 55.5 45 55.6
ATR0691G013 Amborella trichopoda HOM05D001394 ORTHO05D001237 2.6e-06 55.1 60 45.0
CDE02G4740 Ceratophyllum demersum HOM05D001394 ORTHO05D001237 2.6e-06 55.1 40 65.0
Lsat_1_v5_gn_8_37620 Lactuca sativa HOM05D001394 ORTHO05D001237 2.6e-06 55.1 44 59.1
Medtr5g049230 Medicago truncatula HOM05D001394 ORTHO05D001237 2.6e-06 55.1 37 59.5
HPP92_019152 Vanilla planifolia HOM05D001394 ORTHO05D001237 2.6e-06 55.1 45 57.8
GSVIVG01010169001 Vitis vinifera HOM05D001394 ORTHO05D001237 2.6e-06 55.1 41 58.5
AUR62007825 Chenopodium quinoa HOM05D001394 ORTHO05D001237 3.4e-06 54.7 41 61.0
HanXRQChr08g0214791 Helianthus annuus HOM05D001394 ORTHO05D001237 3.4e-06 54.7 37 64.9
HanXRQChr12g0364541 Helianthus annuus HOM05D001394 ORTHO05D001237 3.4e-06 54.7 37 64.9
Psat2g098520 Pisum sativum HOM05D001394 ORTHO05D001237 3.4e-06 54.7 37 59.5
RcHm_v2.0_Chr4g0436831 Rosa chinensis HOM05D001394 ORTHO05D001237 3.4e-06 54.7 37 62.2
Prupe.1G298900 Prunus persica HOM05D001394 ORTHO05D001237 4.4e-06 54.3 37 56.8
Sed0019257 Sechium edule HOM05D001394 ORTHO05D001237 4.4e-06 54.3 37 59.5
TPR.G2673 Trifolium pratense HOM05D001394 ORTHO05D001237 5.8e-06 53.9 37 59.5
Lj4g0003346 Lotus japonicus HOM05D001394 ORTHO05D001237 7.6e-06 53.5 37 59.5
Os02g0581300 Oryza sativa ssp. japonica HOM05D001394 ORTHO05D001237 7.6e-06 53.5 52 55.8
Sopen03g033670 Solanum pennellii HOM05D001394 ORTHO05D001237 7.6e-06 53.5 40 57.5
Ciclev10021281m.g Citrus clementina HOM05D001394 ORTHO05D001237 9.9e-06 53.1 46 52.2
Glyma.02G126800 Glycine max HOM05D001394 ORTHO05D001237 9.9e-06 53.1 42 52.4
Lalb_Chr05g0229001 Lupinus albus HOM05D001394 ORTHO05D001237 9.9e-06 53.1 36 55.6
VMungo0251G1699 Vigna mungo HOM05D001394 ORTHO05D001237 9.9e-06 53.1 37 59.5


User provided reference genes

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