Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0323900 Oryza sativa ssp. japonica HOM05D000039 ORTHO05D043300 1.7e-45 185.7 94 100.0
Os09g0323700 Oryza sativa ssp. japonica HOM05D000039 ORTHO05D000370 1.1e-31 139.8 74 97.3
Zm00001eb390690 Zea mays HOM05D000039 ORTHO05D000370 1.2e-19 99.8 70 77.1
Dinv42539 Davidia involucrata HOM05D000039 ORTHO05D000370 6.5e-13 77.4 74 50.0
PSO017G6825 Papaver somniferum HOM05D000039 ORTHO05D000370 5.5e-12 74.3 65 55.4
PSO063G0749 Papaver somniferum HOM05D000039 ORTHO05D000370 2.1e-11 72.4 65 53.8
PSO063G3810 Papaver somniferum HOM05D000039 ORTHO05D000370 2.1e-11 72.4 65 53.8
Manes.06G129000 Manihot esculenta HOM05D000039 ORTHO05D000370 3.6e-11 71.6 67 55.2
PSO339G1877 Papaver somniferum HOM05D000039 ORTHO05D000370 3.6e-11 71.6 50 62.0
PSO017G5884 Papaver somniferum HOM05D000039 ORTHO05D000370 7.9e-11 70.5 65 53.8
ATR0665G328 Amborella trichopoda HOM05D000039 ORTHO05D000370 1.8e-10 69.3 66 56.1
TAR636G1089 Trochodendron aralioides HOM05D000039 ORTHO05D000370 1.8e-10 69.3 77 50.6
Eucgr.B03838 Eucalyptus grandis HOM05D000039 ORTHO05D000370 2.3e-10 68.9 76 47.4
SalBow6G1075 Salvia bowleyana HOM05D000039 ORTHO05D000370 2.3e-10 68.9 75 54.7
Eucgr.J00503 Eucalyptus grandis HOM05D000039 ORTHO05D000370 3.0e-10 68.6 65 56.9
PSO386G0150 Papaver somniferum HOM05D000039 ORTHO05D000370 3.0e-10 68.6 47 63.8
AUR62036202 Chenopodium quinoa HOM05D000039 ORTHO05D026534 5.1e-10 67.8 75 49.3
AUR62043735 Chenopodium quinoa HOM05D000039 ORTHO05D026534 5.1e-10 67.8 75 49.3
Oeu035568.1 Olea europaea HOM05D000039 ORTHO05D000370 5.1e-10 67.8 74 48.6
CSS0042746 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D043300 6.7e-10 67.4 76 44.7
Oeu031470.1 Olea europaea HOM05D000039 ORTHO05D000370 6.7e-10 67.4 74 51.4
TAR374G1740 Trochodendron aralioides HOM05D000039 ORTHO05D000370 6.7e-10 67.4 69 50.7
PSO017G0221 Papaver somniferum HOM05D000039 ORTHO05D000370 8.8e-10 67.0 65 53.8
ATR0665G188 Amborella trichopoda HOM05D000039 ORTHO05D000370 1.1e-09 66.6 59 55.9
Dinv22832 Davidia involucrata HOM05D000576 ORTHO05D000368 1.1e-09 66.6 65 53.8
Prupe.6G132800 Prunus persica HOM05D000039 ORTHO05D000370 1.5e-09 66.2 75 49.3
PGR102G2954 Punica granatum HOM05D000039 ORTHO05D000370 1.5e-09 66.2 74 51.4
Nn6g33692 Nelumbo nucifera HOM05D000039 ORTHO05D000370 2.0e-09 65.9 70 45.7
Sabra15G0132300 Salix brachista HOM05D000039 ORTHO05D000370 2.5e-09 65.5 73 47.9
TAR636G1010 Trochodendron aralioides HOM05D000039 ORTHO05D000370 2.5e-09 65.5 76 50.0
Dinv21877 Davidia involucrata HOM05D000802 ORTHO05D004081 3.3e-09 65.1 47 61.7
Sc06g0008760 Simmondsia chinensis HOM05D000039 ORTHO05D000370 4.3e-09 64.7 67 46.3
Cfa010002 Carpinus fangiana HOM05D000039 ORTHO05D000370 5.7e-09 64.3 77 45.5
Migut.D02436 Erythranthe guttata HOM05D000039 ORTHO05D000370 5.7e-09 64.3 74 48.6
PSO223G0020 Papaver somniferum HOM05D000039 ORTHO05D000370 7.4e-09 63.9 59 54.2
PGR102G2942 Punica granatum HOM05D000039 ORTHO05D000370 9.7e-09 63.5 77 46.8
EL10Ac7g15843 Beta vulgaris HOM05D000039 ORTHO05D000370 1.3e-08 63.2 59 45.8
HanXRQChr02g0054351 Helianthus annuus HOM05D000039 ORTHO05D000370 1.3e-08 63.2 74 45.9
Ah.08g215630 Amaranthus hybridus HOM05D000039 ORTHO05D000370 1.7e-08 62.8 67 46.3
CAN.G128.169 Capsicum annuum HOM05D000039 ORTHO05D000370 1.7e-08 62.8 69 46.4
Eucgr.B03840 Eucalyptus grandis HOM05D000039 ORTHO05D000370 1.7e-08 62.8 69 46.4
PSO384G0482 Papaver somniferum HOM05D000039 ORTHO05D000370 1.7e-08 62.8 67 46.3
Potri.015G110200 Populus trichocarpa HOM05D000039 ORTHO05D000370 1.7e-08 62.8 72 47.2
Hund20914 Selenicereus undatus HOM05D000039 ORTHO05D000370 1.7e-08 62.8 75 45.3
ClCG01G012140 Citrullus lanatus HOM05D000039 ORTHO05D000370 2.2e-08 62.4 60 51.7
Sed0010952 Sechium edule HOM05D000039 ORTHO05D000370 2.2e-08 62.4 67 50.7
Atru.chr6.1964 Acer truncatum HOM05D000039 ORTHO05D000370 2.8e-08 62.0 76 47.4
EL10Ac8g18868 Beta vulgaris HOM05D000039 ORTHO05D000370 2.8e-08 62.0 69 46.4
Haze_23360 Corylus avellana HOM05D000039 ORTHO05D000370 2.8e-08 62.0 76 42.1
CsaV3_1G014970 Cucumis sativus L. HOM05D000039 ORTHO05D000370 2.8e-08 62.0 60 46.7
CsaV3_1G015890 Cucumis sativus L. HOM05D000039 ORTHO05D000370 2.8e-08 62.0 60 46.7
FAN11G2029 Fragaria x ananassa HOM05D000039 ORTHO05D000370 2.8e-08 62.0 74 47.3
Manes.11G163100 Manihot esculenta HOM05D000039 ORTHO05D000370 2.8e-08 62.0 77 46.8
Hund20912 Selenicereus undatus HOM05D000039 ORTHO05D000370 2.8e-08 62.0 71 43.7
FvH4_3g25270 Fragaria vesca HOM05D000039 ORTHO05D000370 3.7e-08 61.6 74 47.3
MD03G1147900 Malus domestica HOM05D000039 ORTHO05D000370 3.7e-08 61.6 77 48.1
Nitab4.5_0003068g0030 Nicotiana tabacum HOM05D000039 ORTHO05D000370 3.7e-08 61.6 70 52.9
Hund20913 Selenicereus undatus HOM05D000039 ORTHO05D000370 3.7e-08 61.6 73 43.8
Hund20916 Selenicereus undatus HOM05D000039 ORTHO05D000370 3.7e-08 61.6 73 43.8
Hund20925 Selenicereus undatus HOM05D000039 ORTHO05D000370 3.7e-08 61.6 59 45.8
Lj1A255T68 Lonicera japonica HOM05D000039 ORTHO05D000370 4.8e-08 61.2 68 50.0
Lj1C235T10 Lonicera japonica HOM05D000039 ORTHO05D000370 4.8e-08 61.2 68 50.0
CSS0041889 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 6.3e-08 60.8 73 41.1
Cpa.g.sc13.208 Carica papaya HOM05D000039 ORTHO05D000370 6.3e-08 60.8 73 49.3
Cpa.g.sc195.9 Carica papaya HOM05D000039 ORTHO05D000370 6.3e-08 60.8 82 40.2
Lj1A235T72 Lonicera japonica HOM05D000039 ORTHO05D000370 6.3e-08 60.8 48 58.3
MBI04_g03346_MAGBIO Magnolia biondii HOM05D000039 ORTHO05D000370 6.3e-08 60.8 76 46.1
Potri.001G218450 Populus trichocarpa HOM05D000039 ORTHO05D000370 1.1e-07 60.1 79 44.3
Potri.001G218500 Populus trichocarpa HOM05D000039 ORTHO05D000370 1.1e-07 60.1 79 44.3
Hund18767 Selenicereus undatus HOM05D000039 ORTHO05D000370 1.1e-07 60.1 74 44.6
Ah.10g031890 Amaranthus hybridus HOM05D000039 ORTHO05D026534 1.4e-07 59.7 72 45.8
Ah.15g095900 Amaranthus hybridus HOM05D000039 ORTHO05D000370 1.4e-07 59.7 51 47.1
CSS0011664 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 1.4e-07 59.7 77 37.7
ECA233G3355 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.4e-07 59.7 84 42.9
Gohir.A05G079800 Gossypium hirsutum HOM05D000039 ORTHO05D000370 1.4e-07 59.7 78 43.6
Gohir.D05G082700 Gossypium hirsutum HOM05D000039 ORTHO05D000370 1.4e-07 59.7 78 43.6
Gorai.009G084400 Gossypium raimondii HOM05D000039 ORTHO05D000370 1.4e-07 59.7 78 43.6
Nitab4.5_0000227g0360 Nicotiana tabacum HOM05D000039 ORTHO05D000370 1.8e-07 59.3 70 51.4
Peaxi162Scf00609g00029 Petunia axillaris HOM05D000039 ORTHO05D000370 1.8e-07 59.3 72 47.2
Peaxi162Scf00609g00313 Petunia axillaris HOM05D000039 ORTHO05D000370 1.8e-07 59.3 72 47.2
Hund18660 Selenicereus undatus HOM05D000039 ORTHO05D000370 1.8e-07 59.3 65 46.2
EL10Ac7g15844 Beta vulgaris HOM05D000039 ORTHO05D000370 2.4e-07 58.9 73 39.7
Hma1.2p1_0587F.1_g184170 Hydrangea macrophylla HOM05D000039 ORTHO05D000370 2.4e-07 58.9 67 47.8
Lsat_1_v5_gn_6_39000 Lactuca sativa HOM05D000039 ORTHO05D000370 2.4e-07 58.9 75 46.7
PSO063G3191 Papaver somniferum HOM05D000039 ORTHO05D000370 2.4e-07 58.9 68 47.1
PSO832G0573 Papaver somniferum HOM05D000039 ORTHO05D000370 2.4e-07 58.9 68 47.1
Hund18661 Selenicereus undatus HOM05D000039 ORTHO05D000370 2.4e-07 58.9 74 43.2
AUR62009739 Chenopodium quinoa HOM05D000039 ORTHO05D000370 3.1e-07 58.5 60 46.7
Ciclev10030190m.g Citrus clementina HOM05D000039 ORTHO05D000370 3.1e-07 58.5 72 47.2
Hund18763 Selenicereus undatus HOM05D000039 ORTHO05D000370 3.1e-07 58.5 59 40.7
Actinidia24223 Actinidia chinensis HOM05D000039 ORTHO05D000370 4.1e-07 58.2 74 37.8
AUR62036204 Chenopodium quinoa HOM05D000039 ORTHO05D000370 4.1e-07 58.2 74 41.9
PSO063G2493 Papaver somniferum HOM05D000039 ORTHO05D010697 4.1e-07 58.2 65 47.7
PGR119G1698 Punica granatum HOM05D000039 ORTHO05D000370 4.1e-07 58.2 67 46.3
AUR62039436 Chenopodium quinoa HOM05D000039 ORTHO05D000370 5.3e-07 57.8 74 40.5
HanXRQChr02g0053951 Helianthus annuus HOM05D000039 ORTHO05D000370 5.3e-07 57.8 70 42.9
PSO063G3324 Papaver somniferum HOM05D000039 ORTHO05D010697 5.3e-07 57.8 52 53.8
PSO063G3943 Papaver somniferum HOM05D000039 ORTHO05D010697 5.3e-07 57.8 52 53.8
ECA233G1924 Erigeron canadensis HOM05D000039 ORTHO05D000370 6.9e-07 57.4 75 44.0
ECA233G5600 Erigeron canadensis HOM05D000039 ORTHO05D000370 6.9e-07 57.4 79 45.6
Solyc01g009400.3 Solanum lycopersicum HOM05D000039 ORTHO05D000370 6.9e-07 57.4 73 43.8
Sopen01g004910 Solanum pennellii HOM05D000039 ORTHO05D000370 6.9e-07 57.4 73 43.8
AUR62009743 Chenopodium quinoa HOM05D000039 ORTHO05D000370 9.1e-07 57.0 73 47.9
Sc06g0008750 Simmondsia chinensis HOM05D000039 ORTHO05D000370 1.2e-06 56.6 75 38.7
AUR62009740 Chenopodium quinoa HOM05D000039 ORTHO05D000370 1.5e-06 56.2 55 52.7
AUR62026546 Chenopodium quinoa HOM05D000039 ORTHO05D000370 1.5e-06 56.2 61 41.0
Thecc.09G280800 Theobroma cacao HOM05D000039 ORTHO05D000370 1.5e-06 56.2 74 44.6
Ah.08g215610 Amaranthus hybridus HOM05D000039 ORTHO05D000370 2.0e-06 55.8 51 43.1
Lj1A255T69 Lonicera japonica HOM05D000039 ORTHO05D000370 2.0e-06 55.8 68 45.6
COL.COLO4_34026 Corchorus olitorius HOM05D000039 ORTHO05D000370 2.6e-06 55.5 74 44.6
Lsat_1_v5_gn_6_39081 Lactuca sativa HOM05D000039 ORTHO05D000370 2.6e-06 55.5 75 41.3
HanXRQChr02g0054341 Helianthus annuus HOM05D000039 ORTHO05D000370 3.4e-06 55.1 72 41.7
Ah.08g215590 Amaranthus hybridus HOM05D000039 ORTHO05D000370 4.5e-06 54.7 69 34.8
EL10Ac6g13738 Beta vulgaris HOM05D000039 ORTHO05D000370 4.5e-06 54.7 74 40.5
Sabra16G0125600 Salix brachista HOM05D000039 ORTHO05D000370 5.9e-06 54.3 54 51.9
GSVIVG01036100001 Vitis vinifera HOM05D000039 ORTHO05D000370 5.9e-06 54.3 73 45.2
AUR62034299 Chenopodium quinoa HOM05D000039 ORTHO05D000370 7.7e-06 53.9 69 40.6
AUR62036205 Chenopodium quinoa HOM05D000039 ORTHO05D000370 7.7e-06 53.9 77 39.0
Cc01_g08960 Coffea canephora HOM05D000039 ORTHO05D000370 7.7e-06 53.9 76 43.4
Duzib168G0674 Durio zibethinus HOM05D000039 ORTHO05D000370 7.7e-06 53.9 78 41.0


User provided reference genes

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