Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.1e-78 296.6 153 100.0
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.4e-33 144.8 134 52.2
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.2e-33 144.1 134 52.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 9.2e-33 144.1 132 54.5
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.5e-32 142.1 128 54.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.3e-31 139.4 134 50.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.3e-31 139.4 128 50.8
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-30 137.1 135 51.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-30 137.1 135 51.9
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.1e-30 137.1 134 49.3
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.5e-30 136.7 134 49.3
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.5e-30 136.7 134 52.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.9e-30 136.3 130 52.3
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.9e-30 136.3 128 52.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 3.3e-30 135.6 130 49.2
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 4.3e-30 135.2 130 52.3
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 5.6e-30 134.8 135 51.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.3e-30 134.4 129 53.5
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 7.3e-30 134.4 130 51.5
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 9.5e-30 134.0 130 51.5
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 9.5e-30 134.0 128 52.3
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 9.5e-30 134.0 128 52.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.6e-29 133.3 136 49.3
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.6e-29 133.3 136 49.3
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.6e-29 133.3 130 52.3
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.1e-29 132.9 128 51.6
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-29 132.5 128 50.8
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.8e-29 132.5 138 44.9
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.8e-29 132.5 126 51.6
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.6e-29 132.1 129 52.7
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 3.6e-29 132.1 128 49.2
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.6e-29 132.1 134 47.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 4.7e-29 131.7 128 51.6
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 4.7e-29 131.7 124 50.8
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 8.0e-29 131.0 135 48.1
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.0e-28 130.6 138 45.7
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.0e-28 130.6 132 48.5
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.0e-28 130.6 127 49.6
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.0e-28 130.6 127 49.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.4e-28 130.2 128 50.8
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.4e-28 130.2 136 49.3
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.4e-28 130.2 136 46.3
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.4e-28 130.2 138 44.2
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.4e-28 130.2 134 48.5
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.8e-28 129.8 130 48.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.8e-28 129.8 130 48.5
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.8e-28 129.8 124 50.0
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.3e-28 129.4 124 52.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.1e-28 129.0 127 48.0
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.1e-28 129.0 127 48.0
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.1e-28 129.0 130 47.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 5.2e-28 128.3 129 48.8
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 5.2e-28 128.3 130 46.2
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 5.2e-28 128.3 135 45.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 6.8e-28 127.9 130 46.9
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 8.9e-28 127.5 122 48.4
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.9e-28 127.5 130 47.7
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 1.2e-27 127.1 122 49.2
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.5e-27 126.7 130 48.5
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.5e-27 126.7 130 48.5
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.5e-27 126.7 128 50.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.0e-27 126.3 122 49.2
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.0e-27 126.3 128 49.2
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.6e-27 125.9 128 49.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 2.6e-27 125.9 130 50.8
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.6e-27 125.9 128 49.2
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-27 125.2 127 46.5
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-27 125.2 128 46.1
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 4.4e-27 125.2 128 46.1
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.4e-27 125.2 130 46.9
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 5.8e-27 124.8 132 48.5
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.8e-27 124.8 130 48.5
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 7.5e-27 124.4 130 47.7
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 9.8e-27 124.0 130 46.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.2e-26 122.9 128 48.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.2e-26 122.9 130 47.7
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.9e-26 122.5 130 46.9
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.9e-26 122.5 124 46.8
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.7e-26 122.1 142 43.7
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.7e-26 122.1 130 46.2
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 3.7e-26 122.1 130 46.9
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.7e-26 122.1 124 49.2
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.7e-26 122.1 132 47.7
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.4e-26 121.3 126 46.8
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 6.4e-26 121.3 132 46.2
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 8.3e-26 120.9 135 43.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.3e-26 120.9 135 43.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.3e-26 120.9 130 47.7
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.1e-25 120.6 135 43.0
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-25 120.6 124 49.2
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-25 120.6 124 49.2
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.4e-25 120.2 130 46.2
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.9e-25 119.8 130 46.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.9e-25 119.8 125 45.6
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.4e-25 119.4 130 44.6
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 3.2e-25 119.0 152 46.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.2e-25 119.0 130 44.6
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.1e-25 118.6 124 47.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.1e-25 118.6 160 41.9
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 5.4e-25 118.2 131 45.8
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 5.4e-25 118.2 161 41.6
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 7.0e-25 117.9 130 49.2
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.2e-25 117.5 130 44.6
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 9.2e-25 117.5 130 46.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 9.2e-25 117.5 128 43.8
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.6e-24 116.7 143 44.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.0e-24 116.3 130 44.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 2.0e-24 116.3 122 45.9
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 2.7e-24 115.9 128 46.1
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.5e-24 115.5 129 44.2
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.5e-24 115.5 128 42.2
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.5e-24 115.5 128 46.1
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 4.6e-24 115.2 128 42.2
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 7.8e-24 114.4 130 44.6
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 7.8e-24 114.4 134 49.3
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.0e-23 114.0 140 43.6
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.3e-23 113.6 134 45.5
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.7e-23 113.2 130 43.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.0e-23 112.5 124 46.0
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 3.9e-23 112.1 134 43.3
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 5.0e-23 111.7 130 43.8
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 5.0e-23 111.7 130 43.8
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 6.6e-23 111.3 130 43.8
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 6.6e-23 111.3 130 43.8
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 6.6e-23 111.3 134 43.3
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 8.6e-23 110.9 124 46.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 8.6e-23 110.9 134 43.3
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-22 110.5 130 43.8
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-22 110.2 130 43.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.5e-22 110.2 134 43.3
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.5e-22 110.2 130 43.8
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.5e-22 110.2 130 43.8
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 9.5e-22 107.5 128 43.8
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 9.5e-22 107.5 119 46.2
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.8e-20 103.2 130 42.3
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.3e-20 102.8 127 37.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 7.5e-19 97.8 124 42.7
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.2e-18 96.3 75 60.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.4e-17 92.8 124 44.4
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.4e-17 92.8 75 61.3
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.1e-17 91.3 92 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 9.2e-17 90.9 127 44.1
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.6e-16 90.1 85 50.6
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.6e-16 90.1 148 36.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.3e-15 87.0 70 62.9
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.0e-15 85.9 124 41.1
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.9e-15 85.5 99 46.5
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.3e-14 82.0 75 53.3
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 9.5e-14 80.9 71 54.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-13 79.7 75 52.0
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.1e-13 79.7 127 36.2
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.1e-12 77.4 124 37.9
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.8e-12 76.6 90 42.2
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.2e-12 75.1 124 36.3
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.0e-11 73.2 76 46.1
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.6e-11 72.8 76 46.1
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.6e-11 72.8 75 46.7
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 5.8e-11 71.6 130 36.9
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 9.9e-11 70.9 90 38.9
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.1e-09 67.4 69 49.3
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.4e-09 65.1 72 47.2
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.6e-07 58.2 64 48.4


User provided reference genes

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