Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0259701 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D296800 7.4e-93 344.0 188 100.0
Os02g0612700 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D004113 9.9e-13 77.8 38 94.7
Os04g0501500 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D004113 6.0e-10 68.6 38 78.9
Zm00001eb425960 Zea mays HOM05D003419 ORTHO05D004113 1.1e-08 64.3 34 76.5
HPP92_017481 Vanilla planifolia HOM05D003419 ORTHO05D004113 1.5e-08 63.9 38 68.4
Os06g0159750 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D037093 1.3e-07 60.8 201 35.8
Peaxi162Scf00252g00012 Petunia axillaris HOM05D003419 ORTHO05D004113 2.1e-07 60.1 33 75.8
HPP92_017487 Vanilla planifolia HOM05D003419 ORTHO05D037093 2.1e-07 60.1 35 71.4
DCAR_019388 Daucus carota HOM05D003419 ORTHO05D004113 2.8e-07 59.7 33 72.7
Lj9P716T33 Lonicera japonica HOM05D003419 ORTHO05D004113 2.8e-07 59.7 33 72.7
Nitab4.5_0007899g0020 Nicotiana tabacum HOM05D003419 ORTHO05D004113 4.8e-07 58.9 33 72.7
Solyc07g005520.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 4.8e-07 58.9 33 72.7
Sopen00g009550 Solanum pennellii HOM05D003419 ORTHO05D004113 4.8e-07 58.9 33 72.7
Sopen07g001620 Solanum pennellii HOM05D003419 ORTHO05D004113 4.8e-07 58.9 33 72.7
PGSC0003DMG400011180 Solanum tuberosum HOM05D003419 ORTHO05D004113 4.8e-07 58.9 33 72.7
HanXRQChr05g0145591 Helianthus annuus HOM05D003419 ORTHO05D004113 8.1e-07 58.2 33 69.7
Sed0021429 Sechium edule HOM05D003419 ORTHO05D004113 8.1e-07 58.2 33 72.7
Dinv41385 Davidia involucrata HOM05D003419 ORTHO05D004113 1.1e-06 57.8 33 69.7
MSTRG.19643 Avicennia marina HOM05D003419 ORTHO05D004113 1.4e-06 57.4 33 69.7
CAN.G1424.14 Capsicum annuum HOM05D003419 ORTHO05D004113 1.4e-06 57.4 33 69.7
Migut.K00332 Erythranthe guttata HOM05D003419 ORTHO05D004113 1.4e-06 57.4 33 69.7
MD15G1152600 Malus domestica HOM05D003419 ORTHO05D004113 1.4e-06 57.4 33 69.7
QL02p093099 Quercus lobata HOM05D003419 ORTHO05D004113 1.4e-06 57.4 33 69.7
CANSAT11G2069 Cannabis sativa HOM05D003419 ORTHO05D004113 1.8e-06 57.0 33 66.7
Sabra06G0140800 Salix brachista HOM05D003419 ORTHO05D004113 1.8e-06 57.0 37 70.3
TWI34G1449 Tripterygium wilfordii HOM05D003419 ORTHO05D004113 1.8e-06 57.0 33 69.7
ClCG06G012360 Citrullus lanatus HOM05D003419 ORTHO05D004113 2.4e-06 56.6 33 69.7
MELO3C010221.2 Cucumis melo HOM05D003419 ORTHO05D004113 2.4e-06 56.6 33 69.7
CsaV3_1G028940 Cucumis sativus L. HOM05D003419 ORTHO05D004113 2.4e-06 56.6 33 69.7
Duzib187G1066 Durio zibethinus HOM05D003419 ORTHO05D004113 2.4e-06 56.6 33 69.7
Sed0021068 Sechium edule HOM05D003419 ORTHO05D004113 2.4e-06 56.6 33 69.7
Lalb_Chr13g0300891 Lupinus albus HOM05D003419 ORTHO05D004113 3.1e-06 56.2 33 69.7
Nn2g12346 Nelumbo nucifera HOM05D003419 ORTHO05D004113 3.1e-06 56.2 33 66.7
GSVIVG01003872001 Vitis vinifera HOM05D003419 ORTHO05D004113 3.1e-06 56.2 33 72.7
Ca_21121_v3 Cicer arietinum L. HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
Lalb_Chr07g0179841 Lupinus albus HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
Medtr4g130970 Medicago truncatula HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
Phvul.005G040750 Phaseolus vulgaris HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
Psat4g009480 Pisum sativum HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
VMungo1080G0101 Vigna mungo HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
VMungo1127G0049 Vigna mungo HOM05D003419 ORTHO05D004113 4.0e-06 55.8 33 69.7
Cc06_g15090 Coffea canephora HOM05D003419 ORTHO05D004113 5.3e-06 55.5 33 66.7
Phvul.003G156500 Phaseolus vulgaris HOM05D003419 ORTHO05D004113 5.3e-06 55.5 33 69.7
VMungo1215G0436 Vigna mungo HOM05D003419 ORTHO05D004113 5.3e-06 55.5 33 69.7
Ciclev10028452m.g Citrus clementina HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
COL.COLO4_18798 Corchorus olitorius HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Duzib150G1366 Durio zibethinus HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Glyma.02G203400 Glycine max HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Glyma.17G074300 Glycine max HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Gohir.A06G097100 Gossypium hirsutum HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Gohir.D06G097700 Gossypium hirsutum HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Gorai.010G112700 Gossypium raimondii HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Lsat_1_v5_gn_8_64041 Lactuca sativa HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Potri.006G185300 Populus trichocarpa HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Sabra18G0091600 Salix brachista HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Thecc.09G031700 Theobroma cacao HOM05D003419 ORTHO05D004113 6.9e-06 55.1 33 66.7
Cpa.g.sc46.147 Carica papaya HOM05D003419 ORTHO05D004113 9.0e-06 54.7 33 66.7
Oeu021283.1 Olea europaea HOM05D003419 ORTHO05D004113 9.0e-06 54.7 33 66.7
Prupe.7G262000 Prunus persica HOM05D003419 ORTHO05D004113 9.0e-06 54.7 33 66.7
TPR.G39243 Trifolium pratense HOM05D003419 ORTHO05D004113 9.0e-06 54.7 33 66.7
TWI32G0397 Tripterygium wilfordii HOM05D003419 ORTHO05D004113 9.0e-06 54.7 33 66.7


User provided reference genes

Program Settings