Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.9e-98 362.5 177 100.0
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.1e-81 305.8 170 87.6
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.0e-72 276.9 165 78.2
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.4e-71 271.6 167 79.0
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.6e-68 263.1 165 76.4
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.5e-68 261.9 165 75.2
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 4.6e-68 261.5 165 72.7
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 4.6e-68 261.5 165 73.3
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.8e-68 260.8 165 75.8
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.0e-67 260.4 165 75.2
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.3e-67 259.2 165 75.8
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.3e-67 259.2 165 75.8
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.3e-67 259.2 165 75.8
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 3.0e-67 258.8 165 73.9
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 3.9e-67 258.5 165 74.5
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 5.0e-67 258.1 165 72.7
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.0e-67 258.1 165 72.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 5.0e-67 258.1 165 74.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.0e-67 258.1 165 71.5
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 6.6e-67 257.7 165 72.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 8.6e-67 257.3 165 73.3
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.1e-66 256.9 165 70.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.5e-66 256.5 165 72.1
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.9e-66 256.1 165 72.7
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 3.3e-66 255.4 165 72.1
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.3e-66 255.4 165 71.5
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.3e-66 255.0 165 72.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 4.3e-66 255.0 165 72.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.3e-66 255.0 165 72.1
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 5.6e-66 254.6 165 72.1
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.3e-66 254.2 165 73.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 7.3e-66 254.2 165 71.5
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 7.3e-66 254.2 165 72.1
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 7.3e-66 254.2 165 70.9
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 9.5e-66 253.8 165 72.7
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 9.5e-66 253.8 165 72.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.2e-65 253.4 165 70.9
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.2e-65 253.4 165 70.9
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.6e-65 253.1 165 71.5
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.6e-65 253.1 165 71.5
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-65 253.1 165 71.5
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.1e-65 252.7 165 70.9
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.1e-65 252.7 165 70.3
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.6e-65 251.9 165 72.1
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 3.6e-65 251.9 165 73.9
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.6e-65 251.9 165 72.7
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.2e-65 251.1 165 73.9
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 6.2e-65 251.1 165 69.1
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.0e-65 250.8 165 71.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 8.0e-65 250.8 165 71.5
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 8.0e-65 250.8 162 72.2
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 8.0e-65 250.8 165 71.5
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.1e-64 250.4 165 69.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.1e-64 250.4 168 71.4
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.4e-64 250.0 165 70.3
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.4e-64 250.0 164 69.5
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.4e-64 250.0 165 70.9
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.8e-64 249.6 165 67.9
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-64 249.6 168 70.2
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-64 249.6 168 70.8
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.8e-64 249.6 168 70.8
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.8e-64 249.6 167 70.1
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.8e-64 249.6 165 69.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 2.3e-64 249.2 170 70.0
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.3e-64 249.2 165 72.1
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.3e-64 249.2 165 71.5
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.1e-64 248.8 165 72.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.1e-64 248.8 165 69.7
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.1e-64 248.8 165 71.5
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.1e-64 248.8 165 70.9
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.0e-64 248.4 165 72.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.0e-64 248.4 165 72.7
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 5.2e-64 248.1 165 69.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 5.2e-64 248.1 165 70.3
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.2e-64 248.1 167 71.9
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 5.2e-64 248.1 165 70.3
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 5.2e-64 248.1 165 70.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 5.2e-64 248.1 165 72.7
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 5.2e-64 248.1 168 67.9
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.2e-64 248.1 165 72.7
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 6.8e-64 247.7 165 72.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 6.8e-64 247.7 165 72.7
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.2e-63 246.9 165 70.3
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.2e-63 246.9 165 70.3
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.5e-63 246.5 165 70.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.5e-63 246.5 165 71.5
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.6e-63 245.7 165 69.1
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.6e-63 245.7 165 69.1
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.6e-63 245.7 165 69.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.6e-63 245.7 166 72.3
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.6e-63 245.7 165 70.3
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.4e-63 245.4 165 69.7
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 4.4e-63 245.0 169 69.2
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.8e-63 244.6 168 66.7
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 7.5e-63 244.2 165 71.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.8e-63 243.8 165 68.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.7e-62 243.0 165 69.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-62 243.0 165 69.7
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.7e-62 243.0 166 69.9
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.7e-62 243.0 166 70.5
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.9e-62 242.3 166 69.9
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-62 241.9 162 69.8
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.7e-62 241.9 167 70.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 4.9e-62 241.5 165 68.5
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 4.9e-62 241.5 165 70.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.9e-62 241.5 168 66.1
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 6.4e-62 241.1 168 66.7
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 6.4e-62 241.1 165 70.3
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 6.4e-62 241.1 170 70.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 6.4e-62 241.1 165 69.1
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.1e-61 240.4 167 69.5
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.4e-61 240.0 166 69.3
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 2.4e-61 239.2 165 70.9
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.4e-61 238.0 162 69.1
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 5.4e-61 238.0 165 67.9
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 9.2e-61 237.3 165 69.1
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.1e-60 236.1 165 66.1
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.7e-60 235.7 166 69.3
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 2.7e-60 235.7 166 68.7
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.7e-60 235.7 165 69.1
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.7e-60 235.7 166 68.1
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 7.8e-60 234.2 165 67.9
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.7e-59 233.0 142 73.2
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.7e-59 233.0 165 67.3
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.3e-59 232.6 169 66.3
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.3e-59 232.6 190 60.5
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 3.9e-59 231.9 165 66.1
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.1e-58 230.3 165 65.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.1e-58 230.3 165 66.1
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-58 229.9 165 65.5
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-58 229.9 165 65.5
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.5e-58 229.2 165 65.5
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 5.6e-58 228.0 164 66.5
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.6e-57 226.5 151 70.9
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.8e-57 225.7 168 66.1
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.2e-52 210.3 145 67.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 6.0e-52 208.0 151 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-49 200.3 167 61.1
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.8e-49 199.1 165 57.6
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.7e-49 198.4 171 59.6
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 4.7e-49 198.4 167 58.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.8e-48 196.4 142 61.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 5.2e-48 194.9 166 56.0
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 8.9e-48 194.1 135 68.1
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 8.9e-48 194.1 166 57.2
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.4e-45 186.8 165 56.4
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 7.6e-39 164.5 133 60.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 7.1e-37 157.9 110 65.5
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.8e-33 146.0 119 55.5
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 9.0e-32 141.0 105 64.8
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.0e-27 127.5 69 79.7
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 6.7e-27 124.8 94 61.7
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 3.4e-23 112.5 75 62.7
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.4e-21 107.1 67 70.1
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.5e-21 106.3 64 71.9
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.7e-20 102.8 57 78.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.3e-19 99.8 72 62.5
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.6e-12 77.0 58 60.3
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.0e-11 74.3 42 83.3
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.1e-11 72.0 77 51.9
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 7.4e-10 68.2 54 59.3
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.2e-06 56.6 57 52.6
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 5.0e-06 55.5 41 65.9


User provided reference genes

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