Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.5e-62 242.7 122 100.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 3.9e-42 174.9 115 80.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.0e-23 111.7 97 56.7
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.0e-22 109.4 90 56.7
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.0e-22 109.4 93 61.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.6e-22 107.5 97 59.8
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 7.6e-22 107.5 101 55.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 7.6e-22 107.5 94 59.6
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 9.9e-22 107.1 94 57.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.8e-21 105.1 94 56.4
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 3.8e-21 105.1 94 57.4
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.8e-21 105.1 101 55.4
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 4.9e-21 104.8 98 55.1
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 6.4e-21 104.4 94 53.2
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 6.4e-21 104.4 87 57.5
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 6.4e-21 104.4 93 59.1
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.4e-21 104.0 97 58.8
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 8.4e-21 104.0 94 55.3
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.9e-20 102.8 94 54.3
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.9e-20 102.8 94 59.6
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.9e-20 102.8 101 52.5
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.4e-20 102.4 95 52.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.4e-20 102.4 91 56.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.4e-20 102.4 91 58.2
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.4e-20 102.4 94 57.4
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.4e-20 102.4 95 54.7
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.4e-20 102.4 93 57.0
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 3.2e-20 102.1 91 59.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 4.2e-20 101.7 101 55.4
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 4.2e-20 101.7 93 58.1
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.4e-20 101.3 94 56.4
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.1e-20 100.9 91 56.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 7.1e-20 100.9 94 53.2
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 7.1e-20 100.9 93 53.8
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.2e-19 100.1 95 53.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.2e-19 100.1 94 58.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 2.7e-19 99.0 93 53.8
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 4.6e-19 98.2 94 55.3
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 4.6e-19 98.2 95 53.7
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 6.0e-19 97.8 93 52.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.0e-18 97.1 94 54.3
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-18 96.7 94 52.1
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-18 96.7 94 52.1
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-18 96.7 94 52.1
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.3e-18 96.7 98 54.1
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.7e-18 96.3 94 53.2
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.7e-18 96.3 94 53.2
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.7e-18 96.3 98 52.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 54.3
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.3e-18 95.9 94 53.2
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 3.0e-18 95.5 94 54.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.0e-18 95.5 96 53.1
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 3.0e-18 95.5 94 53.2
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 5.1e-18 94.7 94 53.2
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.1e-18 94.7 94 53.2
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 5.1e-18 94.7 91 56.0
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.6e-18 94.4 93 52.7
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 8.7e-18 94.0 90 54.4
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.9e-17 92.8 94 52.1
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.5e-17 92.4 94 52.1
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.3e-17 92.0 105 45.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.3e-17 92.0 90 53.3
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 5.6e-17 91.3 94 54.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 5.6e-17 91.3 94 54.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.3e-17 90.9 94 52.1
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 7.3e-17 90.9 92 51.1
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 9.6e-17 90.5 106 50.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-16 90.1 91 52.7
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.6e-16 89.7 99 46.5
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.1e-16 89.4 94 51.1
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 4.8e-16 88.2 94 50.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.2e-16 87.8 94 47.9
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 6.2e-16 87.8 106 46.2
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 8.1e-16 87.4 97 51.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.8e-15 86.3 94 47.9
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.3e-15 84.7 106 46.2
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 9.0e-15 84.0 94 44.7
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.5e-14 83.2 99 47.5
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.0e-14 82.8 97 44.3
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 3.4e-14 82.0 94 47.9
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.7e-13 79.7 90 46.7
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.9e-13 79.0 106 44.3
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.3e-12 73.9 77 50.6
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 3.5e-11 72.0 97 46.4
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 4.6e-11 71.6 91 44.0
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 7.9e-11 70.9 85 47.1
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.3e-10 70.1 74 50.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.3e-10 70.1 74 50.0
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.7e-10 67.8 77 48.1
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.1e-09 67.0 88 46.6
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.5e-09 66.6 91 42.9
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.5e-09 65.9 77 46.8
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 5.6e-09 64.7 75 48.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 5.6e-09 64.7 75 48.0
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.3e-08 63.5 77 45.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.3e-08 63.5 76 43.4
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 3.7e-08 62.0 86 40.7
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 4.8e-08 61.6 69 47.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-08 61.6 65 50.8
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-07 59.3 66 50.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.3e-07 58.2 71 42.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 6.9e-07 57.8 75 41.3
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 6.9e-07 57.8 71 42.3
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.5e-06 56.6 67 43.3
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.0e-06 56.2 69 44.9
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.0e-06 56.2 69 44.9
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-06 56.2 73 41.1
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-06 56.2 73 41.1
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.0e-06 56.2 73 41.1
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.0e-06 56.2 80 38.8
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.5e-06 55.1 92 35.9
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.5e-06 55.1 77 37.7
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.6e-06 54.3 78 41.0
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.6e-06 54.3 78 41.0
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-05 53.9 55 50.9
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-05 53.9 55 50.9
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.0e-05 53.9 76 38.2


User provided reference genes

Program Settings