Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0110750 Oryza sativa ssp. japonica HOM05D000729 ORTHO05D002596 4.2e-18 93.6 45 100.0
Zm00001eb412340 Zea mays HOM05D000729 ORTHO05D002596 7.4e-15 82.8 44 90.9
Zm00001eb435130 Zea mays HOM05D000729 ORTHO05D002596 7.4e-15 82.8 44 90.9
Zm00001eb437080 Zea mays HOM05D000729 ORTHO05D002596 7.4e-15 82.8 44 90.9
Zm00001eb437740 Zea mays HOM05D000729 ORTHO05D002596 7.4e-15 82.8 44 90.9
Zm00001eb442130 Zea mays HOM05D000729 ORTHO05D002596 7.4e-15 82.8 44 90.9
Atru.chr2.735 Acer truncatum HOM05D000729 ORTHO05D002596 1.1e-13 79.0 44 79.5
CAN.G1178.1 Capsicum annuum HOM05D000729 ORTHO05D002596 6.9e-13 76.3 44 79.5
CAN.G21.57 Capsicum annuum HOM05D000729 ORTHO05D002596 6.9e-13 76.3 44 79.5
CAN.G886.8 Capsicum annuum HOM05D000729 ORTHO05D002596 6.9e-13 76.3 44 79.5
LjContig00318g0011220 Lotus japonicus HOM05D000729 ORTHO05D002596 6.9e-13 76.3 44 79.5
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 6.9e-13 76.3 44 79.5
CAN.G134.5 Capsicum annuum HOM05D000729 ORTHO05D002596 1.5e-12 75.1 44 79.5
Hund03961 Selenicereus undatus HOM05D000729 ORTHO05D001540 1.5e-12 75.1 44 77.3
AL1G51250 Arabidopsis lyrata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
AL2G21880 Arabidopsis lyrata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
AL7G44090 Arabidopsis lyrata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
AL9U12010 Arabidopsis lyrata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ATCG00900 Arabidopsis thaliana HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ATCG01240 Arabidopsis thaliana HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
MSTRG.26838 Avicennia marina HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BcaB02g11352 Brassica carinata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BNapus_Darmor_BZH_scaffold_147p00020 Brassica napus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
C06p23130 Brassica napus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
C09p24720 Brassica napus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolC2t10587H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolSC29t60516H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolSC29t60559H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolSC35t60717H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolSC37t60785H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolSC46t60970H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BolSC49t61155H Brassica oleracea HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC103t45494Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC138t45522Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC138t45542Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC143t45668Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC25t45898Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC58t46450Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC59t46513Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
BraSC59t46560Z Brassica rapa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
CARHR282340 Cardamine hirsuta HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
CARHR282520 Cardamine hirsuta HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
DCAR_032531 Daucus carota HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
DCAR_032545 Daucus carota HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ECA074G0002 Erigeron canadensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ECA074G0004 Erigeron canadensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ECA169G0005 Erigeron canadensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Migut.F01471 Erythranthe guttata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Eucgr.H01180 Eucalyptus grandis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Thhalv10011843m.g Eutrema salsugineum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Gohir.A04G039400 Gossypium hirsutum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Gohir.A05G323788 Gossypium hirsutum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Gohir.A09G045700 Gossypium hirsutum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Gohir.A11G180164 Gossypium hirsutum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Gohir.D02G152108 Gossypium hirsutum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr00c0214g0572651 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr00c0264g0572881 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr00c0386g0574431 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr00c0561g0575911 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr00c0625g0576561 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr01g0020141 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr02g0059641 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr05g0152481 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr07g0194891 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr08g0221201 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr10g0317941 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr11g0321191 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr11g0327121 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr12g0369931 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr13g0413731 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr13g0413811 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr13g0413881 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr13g0416571 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr16g0530781 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr17g0569671 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQCPg0580281 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQCPg0580441 Helianthus annuus HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Hma1.2p1_1244F.1_g270070 Hydrangea macrophylla HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Hma1.2p1_1266F.1_g271445 Hydrangea macrophylla HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Lsat_1_v5_gn_0_40440 Lactuca sativa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Lsat_1_v5_gn_3_14241 Lactuca sativa HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
PSO357G0336 Papaver somniferum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
PSO548G0047 Papaver somniferum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
PSO548G0056 Papaver somniferum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
PGR111G0089 Punica granatum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
PGR111G0112 Punica granatum HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
QL93p0823_0003 Quercus lobata HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
SalBow1G2460 Salvia bowleyana HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
SalBow1G5916 Salvia bowleyana HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
SalBow1G7983 Salvia bowleyana HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
SalBow6G5072 Salvia bowleyana HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Sc03g0010030 Simmondsia chinensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Sc05g0004070 Simmondsia chinensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Sc25g0001950 Simmondsia chinensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
Sc25g0001990 Simmondsia chinensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ScUNg0000280 Simmondsia chinensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
ScUNg0001200 Simmondsia chinensis HOM05D000729 ORTHO05D002596 2.0e-12 74.7 44 77.3
HanXRQChr15g0489691 Helianthus annuus HOM05D000729 ORTHO05D002596 2.6e-12 74.3 44 77.3
Lalb_Chr24g0400841 Lupinus albus HOM05D000729 ORTHO05D002596 2.6e-12 74.3 44 77.3
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 2.6e-12 74.3 41 82.9
Aqoxy4G02025 Aquilegia oxysepala HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
Lalb_Chr07g0191641 Lupinus albus HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
Phvul.002G090566 Phaseolus vulgaris HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
Phvul.003G089801 Phaseolus vulgaris HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
Phvul.009G090260 Phaseolus vulgaris HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
Potri.013G138900 Populus trichocarpa HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
TWI12G0616 Tripterygium wilfordii HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
VMungo0009G0001 Vigna mungo HOM05D000729 ORTHO05D002596 3.4e-12 73.9 44 77.3
Gohir.A12G124800 Gossypium hirsutum HOM05D000729 ORTHO05D002596 4.5e-12 73.6 44 75.0
Atru.chr2.739 Acer truncatum HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.4TE0T7 Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.8K22SI Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.ASG6ZP Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.IYH8UQ Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.L5SUCM Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.MUY2HZ Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.P3G9EK Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
arahy.Tifrunner.gnm1.ann1.Z8FS1H Arachis hypogaea HOM05D000729 ORTHO05D002596 5.8e-12 73.2 44 75.0
LjContig00489g0020564 Lotus japonicus HOM05D000729 ORTHO05D002596 7.6e-12 72.8 44 75.0
Ah.09g227340 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Ah.10g027250 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Ah.10g027270 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Ah.10g027400 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Ah.10g027690 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Ah.10g027710 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Ah.10g029040 Amaranthus hybridus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
arahy.Tifrunner.gnm1.ann1.G8GDNC Arachis hypogaea HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Lalb_Chr07g0191601 Lupinus albus HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 72.7
Sed0005474 Sechium edule HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Sed0007281 Sechium edule HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Sed0014732 Sechium edule HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
Sed0020144 Sechium edule HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
TAR633G0118 Trochodendron aralioides HOM05D000729 ORTHO05D002596 1.0e-11 72.4 44 75.0
BraA07t28396Z Brassica rapa HOM05D000729 ORTHO05D002596 1.3e-11 72.0 44 75.0
EL10Ac5g11386 Beta vulgaris HOM05D000729 ORTHO05D002596 1.7e-11 71.6 44 75.0
unitig_91.g26488 Utricularia gibba HOM05D000729 ORTHO05D002596 1.7e-11 71.6 44 75.0
unitig_91.g26517 Utricularia gibba HOM05D000729 ORTHO05D002596 1.7e-11 71.6 44 75.0
unitig_91.g26529 Utricularia gibba HOM05D000729 ORTHO05D002596 1.7e-11 71.6 44 75.0
CAN.G343.4 Capsicum annuum HOM05D000729 ORTHO05D002596 2.2e-11 71.2 44 72.7
Gorai.013G212500 Gossypium raimondii HOM05D000729 ORTHO05D002596 2.2e-11 71.2 44 72.7
Ah.08g222950 Amaranthus hybridus HOM05D000729 ORTHO05D002596 3.8e-11 70.5 44 72.7
arahy.Tifrunner.gnm1.ann1.QZI0U6 Arachis hypogaea HOM05D000729 ORTHO05D002596 5.0e-11 70.1 44 70.5
BolC6t36195H Brassica oleracea HOM05D000729 ORTHO05D002596 6.5e-11 69.7 44 72.7
AUR62025890 Chenopodium quinoa HOM05D000729 ORTHO05D002596 6.5e-11 69.7 44 72.7
HanXRQChr00c0634g0576571 Helianthus annuus HOM05D000729 ORTHO05D002596 6.5e-11 69.7 41 78.0
unitig_87.g27921 Utricularia gibba HOM05D000729 ORTHO05D002596 6.5e-11 69.7 44 75.0
Gohir.D02G117488 Gossypium hirsutum HOM05D000729 ORTHO05D002596 8.4e-11 69.3 44 72.7
arahy.Tifrunner.gnm1.ann1.JVWB4W Arachis hypogaea HOM05D000729 ORTHO05D002596 1.1e-10 68.9 44 70.5
BraSC143t45647Z Brassica rapa HOM05D000729 ORTHO05D002596 1.1e-10 68.9 44 70.5
DCAR_010482 Daucus carota HOM05D000729 ORTHO05D002596 1.1e-10 68.9 39 79.5
Hma1.2p1_0357F.1_g134440 Hydrangea macrophylla HOM05D000729 ORTHO05D002596 1.4e-10 68.6 44 72.7
RcHm_v2.0_Chr7g0221081 Rosa chinensis HOM05D000729 ORTHO05D002596 1.4e-10 68.6 44 70.5
Oeu038564.1 Olea europaea HOM05D000729 ORTHO05D002596 1.9e-10 68.2 44 72.7
Glyma.13G245200 Glycine max HOM05D000729 ORTHO05D002596 2.5e-10 67.8 44 70.5
Peaxi162Scf00987g00214 Petunia axillaris HOM05D000729 ORTHO05D002596 3.2e-10 67.4 41 73.2
BcaB03g16403 Brassica carinata HOM05D000729 ORTHO05D002596 4.2e-10 67.0 39 76.9
CSS0008506 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D002596 4.2e-10 67.0 44 68.2
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 5.5e-10 66.6 39 76.9
CDE02G2847 Ceratophyllum demersum HOM05D000729 ORTHO05D002596 5.5e-10 66.6 41 70.7
Oeu054715.1 Olea europaea HOM05D000729 ORTHO05D002596 9.3e-10 65.9 44 68.2
Potri.011G084201 Populus trichocarpa HOM05D000729 ORTHO05D002596 1.2e-09 65.5 44 70.5
arahy.Tifrunner.gnm1.ann1.9LD85R Arachis hypogaea HOM05D000729 ORTHO05D002596 3.5e-09 63.9 44 65.9
MELO3C003985.2 Cucumis melo HOM05D000729 ORTHO05D002596 3.5e-09 63.9 44 68.2
Potri.004G140500 Populus trichocarpa HOM05D000729 ORTHO05D002596 6.1e-09 63.2 41 68.3
Nitab4.5_0006683g0140 Nicotiana tabacum HOM05D001325 ORTHO05D001540 1.0e-08 62.4 36 77.8
Nitab4.5_0007104g0050 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.0e-08 62.4 37 75.7
BolSC45t60897H Brassica oleracea HOM05D000729 ORTHO05D002596 3.0e-08 60.8 37 73.0
MELO3C027805.2 Cucumis melo HOM05D000729 ORTHO05D002596 3.0e-08 60.8 38 73.7
Aqoxy7G01466 Aquilegia oxysepala HOM05D000729 ORTHO05D002596 5.1e-08 60.1 33 78.8
BolSC44t60834H Brassica oleracea HOM05D000729 ORTHO05D002596 5.1e-08 60.1 36 75.0
Nitab4.5_0004533g0050 Nicotiana tabacum HOM05D000729 ORTHO05D002596 6.7e-08 59.7 37 73.0
PGSC0003DMG400011820 Solanum tuberosum HOM05D000729 ORTHO05D002596 1.5e-07 58.5 33 78.8
BolSC49t61216H Brassica oleracea HOM05D000729 ORTHO05D002596 1.9e-07 58.2 35 74.3
Nitab4.5_0007979g0040 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.9e-07 58.2 36 72.2
CAN.G255.19 Capsicum annuum HOM05D000729 ORTHO05D002596 3.3e-07 57.4 44 65.9
PSO339G5440 Papaver somniferum HOM05D000729 ORTHO05D002596 3.3e-07 57.4 36 66.7
SEGI_05788 Sequoiadendron giganteum HOM05D000729 ORTHO05D002596 3.3e-07 57.4 44 59.1
Sabra04G0092400 Salix brachista HOM05D000729 ORTHO05D002596 4.3e-07 57.0 41 61.0
Nitab4.5_0004394g0040 Nicotiana tabacum HOM05D000729 ORTHO05D002596 7.4e-07 56.2 36 69.4
Hund15219 Selenicereus undatus HOM05D000729 ORTHO05D002596 9.7e-07 55.8 41 63.4
Sed0027321 Sechium edule HOM05D000729 ORTHO05D002596 1.3e-06 55.5 37 64.9
SMO086G0026 Selaginella moellendorffii HOM05D000729 ORTHO05D002596 6.3e-06 53.1 33 66.7


User provided reference genes

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