Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 2.3e-64 249.2 176 100.0
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 3.3e-50 202.2 124 87.1
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 1.1e-48 197.2 122 87.7
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 1.0e-35 154.1 126 69.8
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 2.8e-33 146.0 89 86.5
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 3.6e-33 145.6 87 87.4
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 8.1e-33 144.4 126 61.9
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 8.1e-33 144.4 120 70.8
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 1.1e-32 144.1 125 61.6
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 1.4e-32 143.7 89 84.3
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 1.4e-32 143.7 125 65.6
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.8e-32 143.3 126 61.1
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 2.4e-32 142.9 86 87.2
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 3.1e-32 142.5 118 69.5
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 3.1e-32 142.5 127 65.4
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 4.0e-32 142.1 89 83.1
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 4.0e-32 142.1 137 65.7
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 6.8e-32 141.4 111 71.2
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 6.8e-32 141.4 86 87.2
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 8.9e-32 141.0 87 83.9
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 1.2e-31 140.6 86 83.7
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 1.2e-31 140.6 112 71.4
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 1.2e-31 140.6 110 70.9
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 1.5e-31 140.2 82 90.2
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.0e-31 139.8 83 88.0
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 2.6e-31 139.4 125 64.8
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 3.4e-31 139.0 85 87.1
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 3.4e-31 139.0 85 83.5
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 3.4e-31 139.0 82 89.0
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 4.4e-31 138.7 85 85.9
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 5.8e-31 138.3 130 66.2
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 7.6e-31 137.9 117 68.4
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 7.6e-31 137.9 115 67.0
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 1.3e-30 137.1 85 83.5
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 1.3e-30 137.1 84 83.3
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.3e-30 137.1 83 85.5
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 1.3e-30 137.1 84 85.7
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.3e-30 137.1 85 83.5
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 1.7e-30 136.7 112 67.9
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 2.2e-30 136.3 120 60.8
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.9e-30 136.0 81 87.7
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 2.9e-30 136.0 81 87.7
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 2.9e-30 136.0 112 68.8
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 3.8e-30 135.6 80 87.5
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 4.9e-30 135.2 119 66.4
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 4.9e-30 135.2 82 85.4
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 8.4e-30 134.4 86 82.6
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 8.4e-30 134.4 85 83.5
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.4e-29 133.7 116 65.5
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 1.9e-29 133.3 118 62.7
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 1.9e-29 133.3 116 67.2
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 1.9e-29 133.3 84 84.5
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 1.9e-29 133.3 109 69.7
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 2.4e-29 132.9 119 59.7
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 3.2e-29 132.5 84 81.0
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 4.1e-29 132.1 82 82.9
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 4.1e-29 132.1 83 80.7
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 5.4e-29 131.7 81 85.2
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 7.1e-29 131.3 80 86.2
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 7.1e-29 131.3 79 84.8
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 9.2e-29 131.0 81 85.2
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 9.2e-29 131.0 85 80.0
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 9.2e-29 131.0 138 60.9
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 1.2e-28 130.6 81 84.0
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 1.2e-28 130.6 81 84.0
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 1.2e-28 130.6 81 84.0
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.2e-28 130.6 112 66.1
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 1.2e-28 130.6 79 83.5
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 1.2e-28 130.6 84 83.3
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 1.6e-28 130.2 79 84.8
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.6e-28 130.2 79 84.8
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.6e-28 130.2 79 84.8
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.6e-28 130.2 79 84.8
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.6e-28 130.2 114 67.5
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 1.6e-28 130.2 79 84.8
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 1.6e-28 130.2 84 81.0
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 2.1e-28 129.8 80 85.0
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 2.1e-28 129.8 80 85.0
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 2.1e-28 129.8 79 82.3
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 2.7e-28 129.4 86 79.1
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 3.5e-28 129.0 114 66.7
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 4.6e-28 128.6 81 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 6.0e-28 128.3 84 81.0
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 7.8e-28 127.9 114 65.8
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 7.8e-28 127.9 143 57.3
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 7.8e-28 127.9 128 59.4
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 1.0e-27 127.5 78 87.2
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.0e-27 127.5 77 85.7
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 1.3e-27 127.1 100 69.0
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 3.0e-27 125.9 75 88.0
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 3.9e-27 125.6 74 87.8
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 3.9e-27 125.6 112 65.2
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 3.9e-27 125.6 112 65.2
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 3.9e-27 125.6 112 65.2
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 8.7e-27 124.4 77 85.7
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 1.5e-26 123.6 80 80.0
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 3.3e-26 122.5 83 73.5
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 3.3e-26 122.5 119 60.5
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 9.6e-26 120.9 77 84.4
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.6e-25 120.2 72 84.7
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 1.6e-25 120.2 119 59.7
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 2.8e-25 119.4 81 74.1
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 4.7e-25 118.6 70 82.9
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 4.7e-25 118.6 134 53.0
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 8.1e-25 117.9 122 58.2
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 1.8e-24 116.7 98 66.3
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 9.0e-24 114.4 70 81.4
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 9.0e-24 114.4 128 57.8
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 9.0e-24 114.4 122 56.6
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 3.4e-23 112.5 102 66.7
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.3e-22 110.5 138 51.4
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.3e-22 110.5 170 46.5
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 1.7e-22 110.2 102 62.7
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 2.4e-21 106.3 91 62.6
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 2.4e-21 106.3 88 72.7
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 2.4e-21 106.3 63 84.1
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 1.3e-19 100.5 82 69.5
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 6.2e-17 91.7 94 59.6
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 4.0e-16 89.0 87 57.5
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 2.9e-14 82.8 82 57.3
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.9e-13 80.1 67 59.7
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 1.0e-11 74.3 232 30.2
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.3e-11 73.9 75 57.3
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 1.1e-10 70.9 87 46.0
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 1.9e-10 70.1 54 70.4
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 2.5e-10 69.7 37 89.2
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 4.3e-10 68.9 46 80.4
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 1.3e-09 67.4 37 83.8
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 8.1e-09 64.7 39 82.1
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 1.5e-07 60.5 92 40.2
MBI03_g28533_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 4.9e-06 55.5 74 41.9


User provided reference genes

Program Settings