Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 0.0e+00 2223.0 1100 100.0
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 0.0e+00 1100.1 1166 53.3
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 8.7e-125 452.6 1227 30.0
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 7.1e-119 433.0 1267 29.5
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 1.3e-117 428.7 1326 29.1
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 5.6e-116 423.3 1366 28.6
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 9.6e-116 422.5 1242 29.4
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.6e-115 421.8 1405 28.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 2.8e-115 421.0 1323 28.7
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 3.7e-115 420.6 1269 29.1
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.5e-113 415.2 1331 28.6
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 7.6e-113 412.9 1301 28.4
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 1.9e-111 408.3 1243 29.3
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 3.2e-111 407.5 1303 27.7
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.1e-110 404.8 1174 30.2
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.9e-110 402.9 1317 28.2
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 5.6e-108 396.7 1244 29.3
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 9.6e-108 396.0 1374 28.2
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 1.6e-107 395.2 1273 28.7
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 3.7e-107 394.0 1244 29.6
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.1e-106 392.5 1593 27.0
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.8e-106 391.7 1380 28.2
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 4.0e-106 390.6 1271 28.3
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 2.0e-105 388.3 1249 27.8
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 2.6e-105 387.9 1320 29.0
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 3.4e-105 387.5 1212 29.5
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 7.6e-105 386.3 1318 28.5
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 4.9e-104 383.6 1422 27.3
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.5e-103 381.3 1198 28.5
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 1.2e-102 379.0 1322 28.2
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.6e-102 378.6 1246 27.6
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 1.8e-101 375.2 1224 27.8
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 1.9e-100 371.7 1258 27.8
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 4.8e-99 367.1 1238 27.3
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.4e-98 365.5 1277 27.3
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.4e-98 364.8 1304 28.4
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.1e-98 364.0 1203 27.8
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 4.1e-98 364.0 1222 28.4
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 5.3e-98 363.6 1349 27.3
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 6.9e-98 363.2 1312 27.7
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.2e-97 362.5 1526 26.1
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 5.9e-97 360.1 1269 27.5
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 5.9e-97 360.1 1269 27.5
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 2.9e-96 357.8 1289 28.1
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 3.8e-96 357.5 1182 27.8
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 1.4e-95 355.5 1247 27.3
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 3.2e-95 354.4 1289 27.1
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 3.2e-95 354.4 1203 27.9
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.2e-95 354.4 1322 27.6
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 9.3e-95 352.8 1311 26.2
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.1e-94 351.7 1317 27.8
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 4.6e-94 350.5 1267 27.9
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 4.6e-94 350.5 1378 25.2
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 1.3e-93 349.0 1285 27.8
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 6.7e-93 346.7 1103 29.4
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.9e-92 345.1 1146 28.0
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 2.5e-92 344.7 1225 28.2
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 4.3e-92 344.0 1244 27.3
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 9.7e-92 342.8 1382 26.1
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.7e-91 342.0 1475 24.3
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 2.8e-91 341.3 1272 26.5
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 8.2e-91 339.7 1233 26.4
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 1.1e-90 339.3 1318 26.1
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 3.1e-90 337.8 1219 27.5
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 5.3e-90 337.0 1217 26.4
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 9.1e-90 336.3 1199 27.9
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 7.7e-89 333.2 1106 27.8
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.3e-88 332.4 1360 26.7
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 1.7e-88 332.0 1219 27.2
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 5.0e-88 330.5 1148 26.4
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 8.5e-88 329.7 1150 26.8
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 2.3e-85 321.6 1166 26.8
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.3e-84 317.8 354 47.2
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.9e-81 307.0 907 29.0
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.2e-80 305.1 1165 26.6
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 3.8e-80 304.3 1179 26.6
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 7.2e-79 300.1 1242 26.7
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 5.2e-77 293.9 1112 26.9
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 9.7e-76 289.7 1193 25.8
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 6.5e-72 276.9 1104 25.7
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 6.5e-72 276.9 1093 26.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.1e-71 276.2 1006 27.6
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.5e-71 275.0 451 35.0
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 9.4e-71 273.1 1104 26.4
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 2.1e-70 271.9 1255 25.4
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.7e-70 270.8 919 27.9
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.3e-67 262.7 410 36.1
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 1.1e-66 259.6 410 35.9
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.0e-65 255.4 1321 25.1
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 3.5e-65 254.6 957 25.7
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 5.5e-63 247.3 1188 26.3
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.8e-59 234.2 252 45.2
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 3.1e-58 231.5 1061 24.2
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 6.1e-54 217.2 222 47.3
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 4.0e-53 214.5 445 30.8
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.5e-52 212.6 285 39.6
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 3.7e-51 208.0 442 30.1
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 1.0e-48 199.9 337 34.7
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.9e-48 198.4 499 31.3
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.7e-40 172.6 738 25.9
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.9e-40 171.4 735 26.1
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 5.6e-39 167.5 156 53.8
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.5e-36 159.5 130 60.0
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 5.8e-36 157.5 130 59.2
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 2.9e-35 155.2 432 30.6
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.1e-34 151.4 134 56.7
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 7.8e-33 147.1 148 49.3
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.5e-31 142.1 478 27.6
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 3.1e-29 135.2 1084 22.7
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.2e-27 129.0 107 58.9
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.2e-27 129.0 221 35.7
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 8.3e-27 127.1 138 46.4
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 2.1e-25 122.5 115 52.2
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 2.1e-25 122.5 154 44.8
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.0e-24 120.2 113 54.0
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.3e-24 119.8 83 63.9
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 1.5e-23 116.3 142 44.4
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.5e-20 106.3 87 60.9
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 7.1e-18 97.4 502 23.7
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.8e-17 94.0 93 49.5
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.3e-15 88.6 82 56.1
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 9.6e-15 87.0 170 30.6
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 1.2e-14 86.7 82 54.9
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.6e-14 85.1 160 36.9
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 3.8e-11 75.1 114 36.0
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.6e-09 68.2 57 52.6
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.3e-08 65.9 57 50.9
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.0e-08 65.5 57 50.9
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 6.6e-08 64.3 137 32.1
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.1e-06 59.3 148 37.2
SGA_v2.0_scaffold290G47293 Striga asiatica HOM05D000590 ORTHO05D005739 8.1e-06 57.4 113 31.0


User provided reference genes

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