Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.1e-235 819.7 442 100.0
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 6.4e-103 378.6 361 59.6
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.5e-40 171.4 159 51.6
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.0e-39 168.7 173 49.1
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.2e-39 167.5 171 49.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 5.0e-39 166.4 183 48.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 5.0e-39 166.4 183 48.1
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.1e-38 165.2 153 50.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 5.5e-38 162.9 174 47.1
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 7.2e-38 162.5 167 49.1
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 9.4e-38 162.2 163 49.1
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 9.4e-38 162.2 153 51.0
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 9.4e-38 162.2 153 51.0
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 9.4e-38 162.2 136 54.4
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.2e-37 161.8 153 51.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.1e-37 161.0 154 51.3
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.1e-37 161.0 176 46.6
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.1e-37 161.0 176 46.6
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 2.1e-37 161.0 142 53.5
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 2.7e-37 160.6 164 49.4
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 6.1e-37 159.5 160 46.9
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 6.1e-37 159.5 164 49.4
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 6.1e-37 159.5 145 51.7
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 6.1e-37 159.5 205 42.4
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 8.0e-37 159.1 172 45.3
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 8.0e-37 159.1 136 53.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.0e-37 159.1 191 44.0
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 8.0e-37 159.1 168 48.2
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.0e-36 158.7 160 46.9
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.8e-36 157.9 195 41.0
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.0e-36 157.1 161 46.6
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 3.0e-36 157.1 161 47.8
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.0e-36 157.1 155 50.3
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 4.0e-36 156.8 214 41.1
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 4.0e-36 156.8 160 47.5
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.0e-36 156.8 156 49.4
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 5.2e-36 156.4 167 47.3
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 6.7e-36 156.0 152 50.0
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.1e-35 155.2 152 48.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.5e-35 154.8 185 42.7
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.5e-35 154.8 176 44.3
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.5e-35 154.8 158 48.7
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.0e-35 154.5 166 47.0
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.6e-35 154.1 174 46.6
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.6e-35 154.1 191 42.9
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 4.4e-35 153.3 159 47.8
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 4.4e-35 153.3 153 47.7
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 4.4e-35 153.3 164 45.1
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 4.4e-35 153.3 192 43.2
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.5e-35 152.5 191 42.9
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.3e-34 151.8 178 39.9
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.7e-34 151.4 174 46.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-34 151.4 177 45.8
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.7e-34 151.4 168 47.6
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.7e-34 151.4 168 47.6
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.7e-34 151.4 168 47.6
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.7e-34 151.4 168 47.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.2e-34 151.0 173 45.7
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.8e-34 150.6 164 45.7
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 3.7e-34 150.2 173 45.7
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 4.8e-34 149.8 178 42.7
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 4.8e-34 149.8 178 42.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 4.8e-34 149.8 152 49.3
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 8.2e-34 149.1 153 48.4
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-33 148.7 151 49.0
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-33 148.7 151 49.0
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.1e-33 148.7 182 42.9
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-33 148.3 174 43.7
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 1.4e-33 148.3 163 47.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.8e-33 147.9 182 43.4
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.8e-33 147.9 176 43.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.4e-33 147.5 174 45.4
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.4e-33 147.5 174 45.4
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.4e-33 147.5 174 45.4
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.4e-33 147.5 169 45.6
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.4e-33 147.5 174 43.1
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 3.1e-33 147.1 182 42.3
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.1e-33 147.1 182 42.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 5.3e-33 146.4 152 46.1
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 7.0e-33 146.0 202 40.6
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 9.1e-33 145.6 185 42.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.6e-32 144.8 174 44.8
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.6e-32 144.1 172 43.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-32 144.1 141 48.9
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.5e-32 143.7 180 43.3
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 3.5e-32 143.7 152 45.4
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 4.5e-32 143.3 169 45.0
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.0e-31 142.1 152 45.4
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 5.0e-31 139.8 183 41.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 6.5e-31 139.4 202 39.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 8.5e-31 139.0 191 42.9
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.5e-30 138.3 193 40.4
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.5e-30 138.3 206 39.8
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.5e-30 138.3 146 45.9
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-30 137.5 148 45.3
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.2e-30 137.1 131 48.9
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.2e-30 137.1 209 40.7
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 9.4e-30 135.6 148 44.6
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.6e-29 134.8 209 40.7
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 2.7e-29 134.0 167 41.9
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 3.6e-29 133.7 160 44.4
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.6e-29 133.7 159 45.9
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 6.1e-29 132.9 211 37.0
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-28 131.3 172 41.3
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 4.0e-28 130.2 131 44.3
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 6.8e-28 129.4 131 45.8
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.6e-27 127.5 211 36.0
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 9.8e-27 125.6 131 48.9
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.3e-26 125.2 161 42.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.2e-26 124.4 136 47.1
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 6.3e-26 122.9 182 43.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 9.1e-25 119.0 123 48.8
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-24 117.5 171 40.9
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 4.5e-24 116.7 161 37.9
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 6.5e-23 112.8 162 38.3
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 7.2e-22 109.4 131 41.2
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 9.4e-22 109.0 142 42.3
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.3e-20 104.4 175 35.4
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.8e-20 102.4 98 48.0
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.0e-19 101.3 106 45.3
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 7.5e-19 99.4 175 33.7
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 7.5e-19 99.4 135 38.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 8.3e-18 95.9 98 43.9
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.8e-17 94.7 175 36.6
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.8e-17 94.7 175 36.6
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.1e-17 94.0 93 45.2
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 7.0e-17 92.8 96 42.7
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 7.7e-16 89.4 98 39.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 2.9e-15 87.4 97 39.2
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.3e-14 83.6 70 52.9
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 2.1e-13 81.3 73 47.9
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.4e-12 78.6 121 38.0
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.4e-12 78.6 70 50.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 6.8e-12 76.3 88 51.1
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-11 75.5 55 58.2
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.4e-10 69.7 77 46.8
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.0e-07 62.4 57 54.4
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.0e-07 62.4 67 50.7
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.0e-07 60.8 67 49.3
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 6.6e-07 59.7 81 46.9
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.1e-06 58.9 54 53.7
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 1.1e-06 58.9 89 33.7
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.5e-06 57.8 65 47.7
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.3e-06 57.4 71 40.8
PRCOL_00003051 Prasinoderma coloniale HOM05D046594 ORTHO05D005201 4.3e-06 57.0 87 31.0


User provided reference genes

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