Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.5e-110 402.9 204 100.0
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 5.8e-83 311.2 211 81.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 4.6e-80 301.6 211 77.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.3e-79 299.3 211 76.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.0e-79 298.9 212 76.4
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 6.6e-79 297.7 217 73.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 8.6e-79 297.4 212 76.4
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.1e-78 297.0 208 76.4
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-78 297.0 212 75.9
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.5e-78 296.6 212 75.9
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.5e-78 296.6 215 75.3
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.5e-78 296.6 210 75.2
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.5e-78 295.8 210 76.2
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 3.3e-78 295.4 210 77.1
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 5.6e-78 294.7 211 75.8
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.3e-78 294.3 210 76.7
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 7.3e-78 294.3 213 74.2
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 9.6e-78 293.9 182 82.4
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 9.6e-78 293.9 209 75.1
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.2e-77 293.5 210 74.8
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.2e-77 293.5 210 74.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.2e-77 293.5 217 74.2
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.6e-77 293.1 214 73.8
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.1e-77 292.7 217 73.7
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.1e-77 292.7 210 74.3
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.1e-77 292.7 210 74.3
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.8e-77 292.4 193 78.2
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 3.6e-77 292.0 208 75.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.6e-77 292.0 214 73.8
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.6e-77 292.0 216 74.1
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 4.7e-77 291.6 214 73.8
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 4.7e-77 291.6 196 78.1
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 4.7e-77 291.6 214 72.0
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 4.7e-77 291.6 210 74.3
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 4.7e-77 291.6 190 77.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 8.1e-77 290.8 200 76.0
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 8.1e-77 290.8 209 75.6
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 8.1e-77 290.8 215 72.1
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.4e-76 290.0 214 73.4
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.4e-76 290.0 213 74.6
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.8e-76 289.7 210 73.8
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.8e-76 289.7 212 71.7
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.8e-76 289.7 217 74.2
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.4e-76 289.3 214 72.0
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.4e-76 289.3 215 72.1
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.4e-76 289.3 204 75.5
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.4e-76 289.3 214 73.4
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 3.1e-76 288.9 202 76.2
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.1e-76 288.9 202 76.2
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 3.1e-76 288.9 225 70.7
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 3.1e-76 288.9 183 80.9
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.1e-76 288.9 212 72.6
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.1e-76 288.9 212 75.0
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 3.1e-76 288.9 208 74.0
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.0e-76 288.5 201 76.1
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.0e-76 288.5 201 76.1
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 4.0e-76 288.5 212 75.0
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 4.0e-76 288.5 212 73.6
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.8e-76 287.7 212 74.1
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 6.8e-76 287.7 190 77.4
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 8.9e-76 287.3 207 74.4
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.9e-76 287.3 212 73.6
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.9e-76 287.3 208 75.0
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.2e-75 287.0 218 72.9
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.2e-75 287.0 209 73.7
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.2e-75 287.0 207 72.9
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.2e-75 287.0 207 74.9
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.5e-75 286.6 205 76.6
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 2.0e-75 286.2 209 73.7
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.0e-75 286.2 212 74.1
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.6e-75 285.8 217 72.4
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 3.4e-75 285.4 207 76.8
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 3.4e-75 285.4 216 72.7
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 4.4e-75 285.0 206 73.8
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 4.4e-75 285.0 210 72.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 4.4e-75 285.0 185 78.9
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 5.8e-75 284.6 217 71.9
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 5.8e-75 284.6 206 74.8
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 5.8e-75 284.6 214 71.0
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 7.6e-75 284.3 183 78.7
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 9.9e-75 283.9 209 74.2
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 9.9e-75 283.9 215 71.2
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 9.9e-75 283.9 219 70.8
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 9.9e-75 283.9 210 72.9
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 9.9e-75 283.9 203 74.4
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.3e-74 283.5 215 71.6
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.3e-74 283.5 204 73.0
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.3e-74 283.5 211 73.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.3e-74 283.5 188 76.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.7e-74 283.1 206 74.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 1.7e-74 283.1 144 93.1
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.7e-74 283.1 219 71.7
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.7e-74 283.1 217 71.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 2.2e-74 282.7 182 79.7
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 2.2e-74 282.7 214 72.0
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 2.2e-74 282.7 213 72.3
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.2e-74 282.7 211 72.0
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.9e-74 282.3 207 74.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.8e-74 282.0 203 73.9
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.9e-74 281.6 210 73.3
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.9e-74 281.6 193 76.2
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 4.9e-74 281.6 203 73.9
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 6.4e-74 281.2 216 71.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.4e-73 280.0 208 73.1
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.9e-73 279.6 218 69.7
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.4e-73 279.3 208 74.0
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 5.4e-73 278.1 209 72.2
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 5.4e-73 278.1 203 73.4
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 5.4e-73 278.1 212 71.2
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 7.1e-73 277.7 204 73.0
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.2e-72 276.9 205 72.2
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.6e-72 276.6 205 71.2
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.6e-72 276.6 207 73.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 2.7e-72 275.8 215 71.2
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 3.5e-72 275.4 212 70.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 4.6e-72 275.0 219 68.9
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-70 270.4 205 72.2
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.1e-70 270.4 203 72.4
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.3e-70 268.5 203 71.9
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.3e-70 268.5 203 71.9
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.3e-70 268.5 209 70.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 9.6e-70 267.3 209 69.9
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.6e-69 266.5 147 84.4
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.4e-68 263.5 198 72.2
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.4e-68 263.5 211 69.2
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 4.4e-67 258.5 204 69.6
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 4.4e-67 258.5 204 69.6
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 4.4e-67 258.5 182 72.0
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.9e-66 255.8 210 66.7
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 6.4e-66 254.6 196 72.4
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.1e-65 253.8 198 70.7
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.4e-65 251.5 157 77.1
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.1e-65 251.1 168 73.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 9.3e-65 250.8 165 74.5
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.6e-64 250.0 171 74.9
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 7.9e-64 247.7 206 68.4
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.3e-63 246.1 211 64.0
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 3.9e-63 245.4 216 63.4
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.3e-62 242.3 186 72.0
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 4.8e-61 238.4 212 63.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 4.0e-60 235.3 175 73.7
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 2.6e-59 232.6 149 74.5
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.4e-57 226.9 211 63.0
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 9.3e-57 224.2 196 59.7
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 1.2e-56 223.8 196 60.7
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 3.1e-52 209.1 218 56.9
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.2e-43 180.6 218 54.6
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.5e-43 180.3 218 53.2
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.6e-40 170.2 92 87.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.4e-33 144.4 211 47.4
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.3e-31 139.8 75 89.3
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 2.6e-14 83.2 106 51.9
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 1.1e-12 77.8 106 50.9
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.1e-12 76.3 100 51.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 3.8e-10 69.3 79 53.2


User provided reference genes

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