Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 7.1e-93 344.4 209 100.0
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 2.2e-62 243.0 154 76.6
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.1e-61 240.7 161 76.4
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.4e-61 240.4 200 72.0
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.9e-61 240.0 147 79.6
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 3.2e-61 239.2 156 76.9
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 3.2e-61 239.2 154 77.3
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 9.4e-61 237.7 156 76.3
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.6e-60 236.9 150 76.7
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.1e-60 236.5 144 81.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.7e-60 236.1 144 80.6
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 3.6e-60 235.7 143 79.7
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 3.6e-60 235.7 144 79.2
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 3.6e-60 235.7 143 81.1
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 4.6e-60 235.3 154 76.6
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 4.6e-60 235.3 144 79.2
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 7.9e-60 234.6 153 76.5
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 7.9e-60 234.6 156 75.0
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.0e-59 234.2 144 79.2
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.8e-59 233.4 159 73.6
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.8e-59 233.4 144 79.2
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.8e-59 233.4 161 73.3
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 2.3e-59 233.0 161 72.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.3e-59 233.0 144 79.2
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 2.3e-59 233.0 144 79.9
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 2.3e-59 233.0 144 80.6
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 3.0e-59 232.6 164 71.3
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.0e-59 232.6 159 74.2
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 3.0e-59 232.6 161 73.3
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 3.9e-59 232.3 166 71.7
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 3.9e-59 232.3 154 76.0
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 3.9e-59 232.3 161 72.0
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 3.9e-59 232.3 161 73.3
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 6.7e-59 231.5 143 77.6
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 6.7e-59 231.5 160 71.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 6.7e-59 231.5 143 78.3
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 6.7e-59 231.5 154 74.7
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 6.7e-59 231.5 154 74.7
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 6.7e-59 231.5 220 58.2
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 8.8e-59 231.1 154 75.3
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 8.8e-59 231.1 165 71.5
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 1.1e-58 230.7 143 77.6
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.1e-58 230.7 161 72.7
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.5e-58 230.3 150 78.0
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.5e-58 230.3 144 77.1
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.0e-58 229.9 143 77.6
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.0e-58 229.9 165 70.3
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 2.0e-58 229.9 154 73.4
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.3e-58 228.8 154 74.0
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 4.3e-58 228.8 154 74.0
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 4.3e-58 228.8 143 77.6
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 4.3e-58 228.8 161 70.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 5.7e-58 228.4 161 70.2
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 9.7e-58 227.6 131 82.4
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.3e-57 227.3 143 77.6
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.3e-57 227.3 143 78.3
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.7e-57 226.9 154 72.7
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 1.7e-57 226.9 137 81.0
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 2.2e-57 226.5 161 70.8
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.8e-57 225.3 161 69.6
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 4.8e-57 225.3 153 73.2
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 4.8e-57 225.3 151 74.2
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 8.2e-57 224.6 147 75.5
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 1.1e-56 224.2 144 75.7
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.9e-56 221.5 144 75.7
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.9e-56 221.5 144 75.7
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 6.9e-56 221.5 150 74.0
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.2e-55 220.7 175 65.1
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 2.0e-55 219.9 152 71.1
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.9e-55 218.4 159 69.2
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.9e-55 218.4 159 69.2
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 5.9e-55 218.4 151 71.5
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 7.7e-55 218.0 150 73.3
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 7.7e-55 218.0 150 73.3
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 7.7e-55 218.0 133 78.2
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.3e-54 217.2 161 68.9
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.7e-54 216.9 144 72.2
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 2.2e-54 216.5 151 70.9
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 2.9e-54 216.1 144 73.6
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 2.9e-54 216.1 144 73.6
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 5.0e-54 215.3 151 70.2
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.1e-53 214.2 130 80.0
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 1.4e-53 213.8 134 76.1
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 3.6e-52 209.1 224 53.1
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 4.7e-52 208.8 127 78.7
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 4.7e-52 208.8 136 72.8
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.1e-50 204.1 150 68.0
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 1.6e-47 193.7 161 62.7
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.3e-46 190.7 127 74.8
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 1.0e-43 181.0 134 61.9
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 1.0e-43 181.0 158 56.3
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.5e-42 177.2 129 67.4
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.4e-40 170.6 129 65.9
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 6.5e-38 161.8 91 83.5
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 4.7e-36 155.6 144 56.2
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.8e-35 153.7 144 59.7
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.7e-33 147.1 110 70.9
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.5e-31 139.4 118 63.6
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.5e-29 134.0 100 70.0
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 7.2e-29 131.7 156 52.6
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 6.1e-28 128.6 133 54.1
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 5.2e-27 125.6 148 48.6
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 1.3e-25 120.9 94 68.1
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 1.3e-25 120.9 94 68.1
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 6.3e-25 118.6 80 81.2
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.2e-20 104.4 66 77.3
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.4e-18 96.3 86 62.8
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 7.5e-18 95.1 62 75.8
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.8e-16 90.5 109 48.6
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 7.8e-15 85.1 63 66.7
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 9.8e-10 68.2 37 83.8
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 1.7e-09 67.4 31 87.1
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.2e-09 67.0 31 87.1
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 1.2e-07 61.2 91 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 7.8e-07 58.5 58 50.0
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 5.0e-06 55.8 25 88.0


User provided reference genes

Program Settings