Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 1.4e-94 349.7 193 100.0
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 9.1e-54 214.2 173 62.4
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 4.5e-53 211.8 171 63.2
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 1.3e-52 210.3 175 61.1
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.1e-51 207.2 175 58.3
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 3.0e-49 199.1 175 55.4
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 3.0e-49 199.1 174 58.0
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 5.2e-49 198.4 173 56.1
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 6.8e-49 198.0 174 59.2
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 8.8e-49 197.6 172 57.0
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.5e-48 196.8 173 57.2
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.5e-48 196.8 172 57.0
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.5e-48 196.8 175 54.3
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.5e-48 196.8 175 56.0
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 2.0e-48 196.4 174 57.5
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 3.4e-48 195.7 175 54.3
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 3.4e-48 195.7 175 56.6
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 4.4e-48 195.3 175 54.3
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 5.7e-48 194.9 172 58.1
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 7.5e-48 194.5 173 54.9
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 9.7e-48 194.1 175 55.4
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.3e-47 193.7 172 58.1
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.3e-47 193.7 173 54.3
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.2e-47 193.0 176 55.7
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.2e-47 193.0 175 56.6
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 2.8e-47 192.6 174 56.3
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 3.7e-47 192.2 171 57.9
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 3.7e-47 192.2 173 53.2
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 4.8e-47 191.8 172 55.2
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 4.8e-47 191.8 175 53.1
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 4.8e-47 191.8 176 55.7
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 6.3e-47 191.4 173 57.2
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.1e-46 190.7 175 54.3
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.1e-46 190.7 175 54.3
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 1.1e-46 190.7 172 55.2
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.1e-46 190.7 175 56.0
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.1e-46 190.7 174 56.3
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.1e-46 190.7 176 55.7
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 1.4e-46 190.3 175 54.3
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.8e-46 189.9 175 54.3
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 1.8e-46 189.9 172 55.2
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.4e-46 189.5 175 54.3
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.4e-46 189.5 175 54.9
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 2.4e-46 189.5 174 54.0
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.1e-46 189.1 176 56.2
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 3.1e-46 189.1 172 55.2
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 4.1e-46 188.7 175 56.0
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 4.1e-46 188.7 175 56.0
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 4.1e-46 188.7 172 54.7
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 4.1e-46 188.7 172 53.5
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 5.3e-46 188.3 173 54.9
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 5.3e-46 188.3 173 54.9
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 5.3e-46 188.3 175 56.6
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 9.1e-46 187.6 174 54.0
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 9.1e-46 187.6 174 52.9
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 1.2e-45 187.2 172 54.1
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.6e-45 186.8 173 51.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 2.0e-45 186.4 175 52.6
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 2.7e-45 186.0 175 55.4
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.7e-45 186.0 168 55.4
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 3.5e-45 185.7 171 53.8
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 4.5e-45 185.3 175 54.9
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 4.5e-45 185.3 175 54.9
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 4.5e-45 185.3 175 54.9
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 4.5e-45 185.3 174 55.2
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 5.9e-45 184.9 170 54.1
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.0e-44 184.1 171 53.2
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.0e-44 184.1 173 53.2
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.3e-44 183.7 173 53.8
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.3e-44 183.7 175 53.7
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 1.7e-44 183.3 175 54.3
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.7e-44 183.3 175 54.3
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.7e-44 183.3 175 55.4
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.7e-44 183.3 175 52.0
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 2.2e-44 183.0 172 52.3
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.2e-44 183.0 175 53.7
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 2.9e-44 182.6 173 53.2
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.9e-44 182.6 172 52.3
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 3.8e-44 182.2 175 54.3
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.8e-44 182.2 172 52.9
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 5.0e-44 181.8 173 55.5
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 6.5e-44 181.4 176 51.7
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 6.5e-44 181.4 172 52.9
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 6.5e-44 181.4 173 52.6
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 6.5e-44 181.4 173 52.6
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 6.5e-44 181.4 173 54.9
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.1e-43 180.6 172 52.3
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.1e-43 180.6 172 52.9
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.9e-43 179.9 175 53.7
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 7.2e-43 177.9 174 51.1
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.7e-42 176.0 176 51.1
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 2.7e-42 176.0 174 51.7
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 8.0e-42 174.5 159 56.0
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 1.4e-41 173.7 176 49.4
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 1.5e-40 170.2 173 49.1
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.0e-40 169.9 172 51.2
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.7e-39 166.8 173 48.6
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.4e-38 162.9 192 42.2
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 2.4e-38 162.9 168 50.0
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 3.1e-38 162.5 186 47.3
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 5.4e-38 161.8 154 53.2
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 7.0e-38 161.4 154 52.6
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 9.1e-38 161.0 191 41.9
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 2.0e-37 159.8 184 45.1
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 1.1e-35 154.1 171 47.4
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.0e-32 143.3 132 53.0
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.4e-32 142.1 137 55.5
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 9.8e-32 141.0 178 42.1
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 7.8e-29 131.3 179 37.4
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.9e-28 129.4 178 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 8.6e-28 127.9 169 39.6
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.9e-27 126.7 176 37.5
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 1.9e-27 126.7 106 54.7
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 4.3e-27 125.6 172 39.5
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.6e-26 122.5 160 40.0
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 8.0e-26 121.3 109 55.0
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.2e-22 109.4 155 39.4
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.2e-21 107.5 97 55.7
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.6e-21 107.1 95 51.6
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 6.0e-21 105.1 177 35.0
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 5.6e-19 98.6 93 53.8
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.8e-17 93.6 92 50.0
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.1e-13 80.1 74 58.1
Zm00001eb091070 Zea mays HOM05D006357 ORTHO05D007925 6.8e-09 65.1 39 82.1
Lj5C60T4 Lonicera japonica HOM05D003111 ORTHO05D003502 2.2e-07 60.1 123 30.1
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 3.7e-07 59.3 164 28.7
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 4.9e-07 58.9 148 29.7
GSVIVG01015401001 Vitis vinifera HOM05D003111 ORTHO05D003502 4.9e-07 58.9 164 24.4
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 6.4e-07 58.5 149 28.9
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 8.4e-07 58.2 149 28.9
Hma1.2p1_0092F.1_g046660 Hydrangea macrophylla HOM05D003111 ORTHO05D003502 1.4e-06 57.4 121 30.6
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 2.4e-06 56.6 152 30.3
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 2.4e-06 56.6 146 28.8
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 2.4e-06 56.6 153 28.8
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 3.2e-06 56.2 160 31.2
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 3.2e-06 56.2 165 29.1
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 3.2e-06 56.2 149 28.9
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 5.4e-06 55.5 138 31.9
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 7.1e-06 55.1 165 29.1
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 9.2e-06 54.7 170 27.6
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 9.2e-06 54.7 97 34.0
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 9.2e-06 54.7 153 28.1
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 9.2e-06 54.7 112 32.1


User provided reference genes

Program Settings