Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.0e-176 621.7 309 100.0
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 4.0e-152 541.6 306 86.6
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.5e-130 469.2 300 75.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.1e-128 462.2 308 72.4
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.1e-128 462.2 308 72.7
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 5.2e-128 461.5 308 72.7
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 5.2e-128 461.5 300 73.0
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 4.4e-127 458.4 300 73.3
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 5.8e-127 458.0 300 72.7
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.2e-126 456.1 300 71.7
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.2e-126 456.1 307 70.4
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 3.8e-126 455.3 300 72.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 6.4e-126 454.5 304 70.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.4e-126 454.1 300 71.7
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 8.4e-126 454.1 309 71.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.1e-125 453.8 300 71.3
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.1e-125 453.8 301 72.1
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.4e-125 453.4 300 71.0
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.4e-125 453.4 300 71.7
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.9e-125 453.0 300 72.3
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.4e-125 452.6 300 71.7
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 5.4e-125 451.4 309 70.2
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 5.4e-125 451.4 316 69.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 7.1e-125 451.1 300 71.0
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 7.1e-125 451.1 306 70.6
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 9.3e-125 450.7 313 69.6
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 9.3e-125 450.7 309 70.9
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 9.3e-125 450.7 300 72.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.2e-124 450.3 300 71.7
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 1.6e-124 449.9 314 69.7
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.6e-124 449.9 300 71.3
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.6e-124 449.9 309 70.2
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.1e-124 449.5 300 71.3
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 2.1e-124 449.5 300 70.3
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.1e-124 449.5 300 71.0
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.7e-124 449.1 300 71.0
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 3.5e-124 448.7 306 69.3
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 4.6e-124 448.4 309 68.9
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 4.6e-124 448.4 302 70.9
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 4.6e-124 448.4 320 67.5
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 6.0e-124 448.0 302 70.2
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 6.0e-124 448.0 302 70.2
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 6.0e-124 448.0 309 70.2
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.0e-123 447.2 306 70.3
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.0e-123 447.2 300 70.7
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.0e-123 447.2 300 70.7
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.3e-123 446.8 300 71.0
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.7e-123 446.4 308 69.8
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 2.3e-123 446.0 300 71.0
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.3e-123 446.0 300 70.3
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.3e-123 446.0 300 70.0
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 2.3e-123 446.0 301 70.8
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.3e-123 446.0 300 70.7
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 3.0e-123 445.7 307 70.0
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 3.0e-123 445.7 307 69.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 3.9e-123 445.3 318 67.9
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.1e-123 444.9 300 70.3
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 5.1e-123 444.9 302 69.5
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 6.6e-123 444.5 299 70.2
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 8.7e-123 444.1 321 67.6
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.1e-122 443.7 300 70.3
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.1e-122 443.7 300 70.7
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.5e-122 443.4 313 68.7
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 7.3e-122 441.0 300 72.3
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 9.6e-122 440.7 300 69.7
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 3.6e-121 438.7 283 72.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 3.6e-121 438.7 291 71.5
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.1e-120 435.6 299 70.6
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 3.1e-120 435.6 307 67.8
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 4.0e-120 435.3 309 67.0
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 6.9e-120 434.5 295 71.5
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 6.9e-120 434.5 300 69.7
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 9.0e-120 434.1 300 69.3
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 9.0e-120 434.1 307 67.4
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.2e-119 433.7 343 63.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.5e-119 433.3 282 72.0
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.7e-118 429.9 283 71.7
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.9e-118 429.1 320 65.3
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 3.8e-118 428.7 309 65.0
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 4.9e-118 428.3 309 67.0
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.1e-117 427.2 283 71.7
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.4e-117 426.8 304 66.4
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 4.2e-117 425.2 337 62.3
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.5e-116 422.2 361 59.8
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 3.5e-116 422.2 304 65.5
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 6.0e-116 421.4 304 66.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.0e-115 420.6 337 62.6
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.1e-114 417.2 305 65.6
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 3.3e-114 415.6 304 65.1
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 7.3e-114 414.5 345 61.2
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.3e-113 413.7 296 66.9
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.6e-113 413.3 295 66.1
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 3.6e-113 412.1 296 66.6
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 3.6e-113 412.1 296 66.6
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 6.2e-113 411.4 305 64.6
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.4e-112 410.2 296 65.9
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.4e-112 410.2 298 66.8
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.8e-112 409.8 296 66.2
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.6e-111 406.0 309 65.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 2.6e-111 406.0 295 64.7
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 3.8e-110 402.1 301 61.5
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.4e-109 400.2 286 68.2
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 4.6e-108 395.2 296 64.5
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 3.7e-105 385.6 250 72.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.4e-104 383.6 280 66.8
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-102 375.9 250 70.8
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 6.5e-102 374.8 251 70.5
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-101 374.0 307 61.9
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.1e-101 374.0 300 64.0
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 7.9e-100 367.9 250 68.4
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.3e-99 366.3 304 57.2
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.4e-95 352.4 293 60.4
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.0e-91 339.3 254 65.4
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 3.9e-83 312.4 206 73.3
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 3.7e-81 305.8 206 69.9
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-76 290.4 226 64.2
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 4.4e-74 282.3 213 66.2
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.4e-72 277.3 345 46.1
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-69 267.3 191 68.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.7e-68 263.1 208 60.6
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.0e-67 261.2 186 67.2
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.2e-54 216.9 303 41.9
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 5.5e-53 212.2 388 37.1
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-52 210.7 178 64.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-51 208.0 308 40.3
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.0e-51 206.1 152 68.4
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 5.7e-50 202.2 142 70.4
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-45 188.0 147 60.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.5e-37 160.2 109 62.4
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-34 151.4 115 64.3
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 4.9e-33 146.0 100 69.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.5e-31 139.8 91 68.1
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-25 120.9 79 68.4
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 4.6e-23 112.8 176 38.6
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 4.3e-21 106.3 67 76.1
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 4.9e-17 92.8 85 52.9
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.9e-16 90.9 77 58.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-12 75.5 83 45.8
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.4e-11 73.9 53 71.7
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-10 71.6 55 61.8


User provided reference genes

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