Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.2e-34 147.1 74 100.0
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.5e-28 128.3 72 84.7
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.5e-25 119.0 73 78.1
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.6e-25 118.2 69 76.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-24 115.9 69 75.4
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.3e-24 115.9 69 76.8
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 2.9e-24 114.8 69 72.5
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.8e-24 114.4 69 75.4
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 4.9e-24 114.0 71 76.1
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 4.9e-24 114.0 69 75.4
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 4.9e-24 114.0 69 75.4
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 4.9e-24 114.0 69 76.8
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 4.9e-24 114.0 69 75.4
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 6.4e-24 113.6 69 73.9
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 6.4e-24 113.6 69 73.9
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 6.4e-24 113.6 69 73.9
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 6.4e-24 113.6 69 73.9
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 8.4e-24 113.2 69 73.9
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.1e-23 112.8 69 72.5
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.1e-23 112.8 69 73.9
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.1e-23 112.8 69 72.5
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.4e-23 112.5 69 72.5
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.9e-23 112.1 69 73.9
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.9e-23 112.1 69 75.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 3.2e-23 111.3 69 72.5
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 3.2e-23 111.3 69 71.0
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.2e-23 111.3 69 71.0
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.2e-23 111.3 69 75.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 4.2e-23 110.9 69 71.0
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 5.4e-23 110.5 69 71.0
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.1e-23 110.2 69 69.6
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 9.3e-23 109.8 69 71.0
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 1.2e-22 109.4 69 71.0
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.2e-22 109.4 69 72.5
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.1e-22 108.6 69 71.0
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 2.1e-22 108.6 68 73.5
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.7e-22 108.2 69 68.1
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.7e-22 108.2 69 69.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.7e-22 108.2 69 69.6
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.7e-22 108.2 69 69.6
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 3.5e-22 107.8 66 75.8
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.5e-22 107.8 69 69.6
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 4.6e-22 107.5 72 66.7
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 6.0e-22 107.1 68 67.6
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 6.0e-22 107.1 71 71.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 6.0e-22 107.1 69 69.6
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.0e-22 107.1 69 68.1
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 6.0e-22 107.1 69 68.1
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 6.0e-22 107.1 69 68.1
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 6.0e-22 107.1 69 69.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 7.8e-22 106.7 74 66.2
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 7.8e-22 106.7 68 70.6
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.8e-22 106.7 66 72.7
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 7.8e-22 106.7 69 68.1
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 7.8e-22 106.7 69 69.6
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.0e-21 106.3 68 70.6
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.3e-21 105.9 69 65.2
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.3e-21 105.9 69 68.1
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.3e-21 105.9 66 71.2
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.3e-21 105.9 68 67.6
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.3e-21 105.9 69 68.1
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.3e-21 105.9 68 66.2
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.3e-21 105.9 68 66.2
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.7e-21 105.5 68 69.1
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.7e-21 105.5 69 66.7
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.7e-21 105.5 69 65.2
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.3e-21 105.1 69 66.7
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 3.0e-21 104.8 69 66.7
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.9e-21 104.4 60 75.0
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 5.1e-21 104.0 69 65.2
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.6e-21 103.6 69 66.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.6e-21 103.6 69 66.7
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.6e-21 103.6 66 69.7
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 6.6e-21 103.6 69 65.2
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 6.6e-21 103.6 69 65.2
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 6.6e-21 103.6 69 68.1
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 8.7e-21 103.2 71 66.2
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.1e-20 102.8 69 63.8
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.9e-20 102.1 61 72.1
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.9e-20 102.1 69 65.2
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.9e-20 102.1 61 77.0
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.5e-20 101.7 69 63.8
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.5e-20 101.7 62 67.7
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.3e-20 101.3 69 62.3
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.3e-20 101.3 66 66.7
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.3e-20 100.9 69 60.9
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 4.3e-20 100.9 69 63.8
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 5.6e-20 100.5 59 74.6
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.3e-20 100.1 59 74.6
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 7.3e-20 100.1 68 63.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 7.3e-20 100.1 70 61.4
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.3e-19 99.4 58 75.9
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.3e-19 99.4 72 61.1
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.6e-19 99.0 62 69.4
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.6e-19 99.0 60 70.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.6e-19 99.0 69 59.4
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.6e-19 99.0 69 62.3
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.1e-19 98.6 69 62.3
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.1e-19 98.6 59 72.9
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.1e-19 98.6 61 70.5
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 4.8e-19 97.4 68 63.2
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 4.8e-19 97.4 68 63.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.2e-19 97.1 69 59.4
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.2e-19 97.1 69 60.9
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.1e-18 96.3 68 63.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.8e-18 95.5 69 59.4
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.4e-18 95.1 68 60.3
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.4e-18 95.1 62 67.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.0e-18 94.4 69 58.0
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 4.0e-18 94.4 69 60.9
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 5.3e-18 94.0 74 56.8
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 6.9e-18 93.6 56 73.2
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 6.9e-18 93.6 70 57.1
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 9.0e-18 93.2 66 62.1
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.5e-17 92.4 59 67.8
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.0e-17 92.0 66 57.6
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 2.0e-17 92.0 53 77.4
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.0e-17 92.0 70 55.7
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.0e-17 92.0 70 55.7
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 4.5e-17 90.9 66 59.1
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 4.5e-17 90.9 57 70.2
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 5.8e-17 90.5 66 59.1
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 5.8e-17 90.5 66 59.1
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 5.8e-17 90.5 66 59.1
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 5.8e-17 90.5 66 59.1
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 9.9e-17 89.7 58 69.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.3e-16 89.4 66 57.6
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-16 89.0 74 52.7
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-16 89.0 74 52.7
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.7e-16 89.0 74 52.7
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.7e-16 89.0 74 52.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 4.9e-16 87.4 51 72.5
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 6.4e-16 87.0 63 60.3
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 6.4e-16 87.0 55 63.6
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 8.4e-16 86.7 58 65.5
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.2e-15 84.7 69 50.7
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 5.4e-15 84.0 73 57.5
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.0e-13 79.7 67 49.3
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.8e-13 79.0 67 49.3
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.5e-12 75.1 68 45.6
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 6.2e-11 70.5 64 53.1
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 6.9e-10 67.0 44 68.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.0e-10 66.6 64 51.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 8.4e-08 60.1 64 43.8
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.2e-07 57.8 64 43.8


User provided reference genes

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