Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.2e-290 1000.7 539 100.0
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 4.9e-214 748.0 540 73.7
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 6.0e-111 405.6 485 49.7
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 9.5e-109 398.3 566 45.1
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.2e-105 387.1 548 43.4
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.9e-105 386.7 565 44.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 6.4e-105 385.6 563 43.3
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.4e-104 384.4 551 45.2
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.1e-103 380.6 568 43.5
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.5e-103 379.8 568 43.8
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 8.6e-102 375.2 549 43.7
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.3e-101 373.2 569 42.2
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 7.3e-101 372.1 567 42.7
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 9.5e-101 371.7 563 43.5
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 2.8e-100 370.2 564 43.4
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.6e-100 369.8 559 41.9
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 4.7e-100 369.4 564 41.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 4.7e-100 369.4 554 42.4
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.3e-99 367.1 555 42.9
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 8.9e-99 365.2 550 43.5
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.0e-98 364.0 559 42.6
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 4.4e-98 362.8 553 41.8
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 4.4e-98 362.8 553 43.6
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 5.8e-98 362.5 568 41.7
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.3e-97 361.3 576 41.8
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.3e-97 361.3 553 43.0
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.7e-97 360.9 569 42.9
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.9e-97 360.1 544 42.5
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.9e-97 360.1 568 41.7
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 6.4e-97 359.0 567 42.2
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.1e-96 358.2 544 41.9
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.9e-96 357.5 552 41.7
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.9e-96 357.5 559 42.0
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.0e-95 352.4 550 41.6
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 7.8e-95 352.1 544 41.4
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.3e-94 351.3 545 42.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.5e-93 347.8 561 40.8
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.5e-93 347.8 566 41.0
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.9e-93 347.4 559 39.9
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.5e-93 347.1 542 41.7
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.5e-93 347.1 556 39.6
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.3e-93 346.3 572 40.9
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.3e-93 346.3 558 40.7
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 7.3e-93 345.5 542 40.8
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 9.6e-93 345.1 549 40.4
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 9.6e-93 345.1 562 40.7
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.6e-92 344.4 555 42.9
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.6e-92 344.4 467 44.8
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.8e-92 343.6 562 40.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.6e-92 343.2 573 40.7
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 6.2e-92 342.4 550 42.0
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.1e-92 342.0 568 40.0
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 8.1e-92 342.0 558 40.9
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 1.1e-91 341.7 563 39.3
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.4e-91 340.5 563 40.7
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 3.1e-91 340.1 565 41.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.0e-91 339.7 475 45.1
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.2e-91 339.3 545 41.8
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 8.9e-91 338.6 553 41.6
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.5e-90 337.8 553 41.6
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 4.4e-90 336.3 553 41.4
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.3e-89 334.7 554 39.5
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.3e-89 334.7 544 41.9
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-89 334.7 554 41.5
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.7e-89 334.3 556 41.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 3.8e-89 333.2 561 41.2
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 8.4e-89 332.0 561 41.0
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.1e-88 331.6 470 43.8
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 1.9e-88 330.9 450 44.4
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 7.1e-88 328.9 552 39.7
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 7.1e-88 328.9 548 39.8
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 7.1e-88 328.9 614 37.5
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.1e-87 327.4 560 40.0
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.7e-87 327.0 577 39.5
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 7.8e-87 325.5 565 39.3
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 7.8e-87 325.5 566 40.1
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.3e-86 324.7 552 39.3
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.3e-86 324.7 483 42.0
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.7e-86 324.3 463 45.6
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 5.6e-85 319.3 564 39.2
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.6e-84 316.6 550 39.8
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 6.2e-84 315.8 544 39.9
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 8.1e-84 315.5 618 37.4
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-83 315.1 477 42.6
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.4e-83 313.9 477 42.3
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 4.0e-83 313.2 566 39.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.0e-83 313.2 558 39.6
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 5.3e-83 312.8 567 39.2
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.0e-82 310.8 481 43.2
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 3.4e-82 310.1 578 40.0
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 5.8e-82 309.3 542 39.3
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 7.6e-82 308.9 546 40.3
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 9.9e-82 308.5 554 40.4
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.7e-81 307.8 566 38.7
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.2e-81 307.4 542 39.7
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 4.2e-80 303.1 573 39.4
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 7.1e-80 302.4 561 39.0
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.6e-79 301.2 544 39.3
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.1e-79 300.8 574 39.4
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 7.8e-79 298.9 559 38.5
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.7e-78 297.7 479 42.2
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.1e-77 295.0 564 36.9
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.5e-77 294.7 545 38.2
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 9.6e-77 292.0 547 38.9
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 1.8e-75 287.7 571 37.5
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 6.9e-75 285.8 566 37.1
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 9.0e-75 285.4 566 37.1
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.8e-74 282.7 574 36.4
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 7.6e-74 282.3 562 37.2
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 7.6e-74 282.3 562 37.2
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 9.9e-74 282.0 571 37.1
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 9.9e-74 282.0 376 46.3
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.3e-73 281.6 556 36.3
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 2.8e-60 237.3 350 42.0
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 8.2e-60 235.7 416 38.0
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 7.6e-58 229.2 269 48.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.9e-56 224.6 580 32.9
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 4.8e-52 209.9 322 41.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.3e-38 164.5 186 46.2
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 8.5e-25 119.4 310 33.2
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 2.5e-24 117.9 466 27.5
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 5.0e-17 93.6 78 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.7e-15 87.0 155 38.1
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 5.7e-13 80.1 163 35.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 9.8e-13 79.3 126 36.5
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.2e-12 78.2 138 43.5
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 6.3e-12 76.6 157 30.6
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 8.3e-12 76.3 180 30.0


User provided reference genes

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