Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.6e-300 1034.6 534 100.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.2e-173 610.9 518 60.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-172 610.5 454 65.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.6e-172 610.1 452 66.6
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.0e-172 608.2 452 66.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.0e-171 607.4 525 58.9
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.9e-171 605.5 453 64.7
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 5.1e-171 605.1 464 65.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.6e-171 604.7 456 65.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 8.7e-171 604.4 521 58.2
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-170 602.8 455 65.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-170 602.8 455 65.9
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.5e-170 602.8 458 63.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 3.3e-170 602.4 450 66.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.3e-170 602.1 458 63.5
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 4.3e-170 602.1 463 63.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 4.3e-170 602.1 463 63.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 7.3e-170 601.3 455 64.4
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.2e-169 600.5 459 64.3
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-169 600.5 458 65.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.6e-169 600.1 453 64.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.6e-169 600.1 453 64.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 3.6e-169 599.0 524 57.6
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 6.2e-169 598.2 449 64.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.1e-169 597.8 453 64.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 8.1e-169 597.8 523 58.5
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 8.1e-169 597.8 453 63.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.1e-168 597.4 448 65.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.1e-168 597.4 521 57.4
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-168 597.0 455 65.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-168 597.0 455 65.7
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.4e-168 596.3 454 64.3
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.1e-168 595.9 526 57.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 5.2e-168 595.1 462 62.6
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 5.2e-168 595.1 461 64.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 6.9e-168 594.7 458 63.1
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.2e-167 594.0 519 58.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.0e-167 593.2 460 63.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.0e-167 593.2 450 65.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.0e-167 593.2 518 58.5
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.6e-167 592.8 519 57.8
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 3.4e-167 592.4 450 64.9
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.4e-167 592.0 512 59.4
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 4.4e-167 592.0 516 58.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 7.6e-167 591.3 526 56.7
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 9.9e-167 590.9 529 58.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 9.9e-167 590.9 454 61.9
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.3e-166 590.5 450 64.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.2e-166 589.7 455 63.7
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 3.8e-166 589.0 455 63.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.4e-165 587.0 513 57.9
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.9e-165 586.6 524 57.1
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.9e-165 586.6 449 64.4
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.2e-165 585.9 453 63.8
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.2e-165 585.9 463 62.2
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.2e-165 585.5 527 56.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.4e-165 585.1 463 62.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.4e-165 585.1 461 62.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.3e-165 584.3 458 63.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 9.3e-165 584.3 519 57.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.8e-164 581.3 463 63.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-163 580.9 455 63.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.3e-163 580.5 459 62.7
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.9e-163 578.9 455 63.3
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.5e-162 576.2 454 61.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.3e-162 575.5 496 58.7
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 3.6e-161 572.4 469 61.4
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.1e-160 570.9 453 62.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.4e-160 570.5 454 60.8
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.8e-160 570.1 518 55.4
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.8e-160 570.1 464 60.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 4.0e-160 568.9 455 62.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.0e-160 568.9 454 62.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 4.0e-160 568.9 546 54.9
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 4.0e-160 568.9 546 54.9
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 9.0e-160 567.8 476 60.1
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.4e-159 565.8 473 60.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.3e-158 563.9 452 61.7
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.2e-158 563.1 448 61.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 8.4e-158 561.2 460 61.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-157 560.5 458 60.5
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.2e-157 559.3 481 60.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 3.2e-157 559.3 468 60.5
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 9.3e-157 557.8 480 58.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-156 557.4 449 59.9
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.2e-156 557.4 477 59.1
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.6e-156 557.0 481 59.0
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.7e-156 556.2 449 59.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.7e-156 556.2 461 61.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.7e-156 556.2 464 59.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 6.0e-156 555.1 472 59.7
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 6.0e-156 555.1 472 60.0
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-155 553.5 473 59.6
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-155 552.4 449 59.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.1e-155 552.0 456 59.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 8.7e-155 551.2 488 58.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 8.7e-155 551.2 453 60.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.3e-154 548.9 482 58.9
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 4.3e-154 548.9 480 58.8
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.3e-154 548.9 468 59.6
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 8.1e-153 544.7 470 58.3
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 3.2e-149 532.7 465 59.1
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 7.1e-149 531.6 411 63.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 8.2e-145 518.1 433 59.8
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.4e-144 517.3 454 57.5
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.4e-144 517.3 393 65.1
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.8e-144 516.9 459 58.6
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.8e-144 516.9 515 53.0
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.0e-143 513.5 426 58.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.0e-139 499.6 440 57.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.0e-134 482.3 446 56.1
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.9e-133 480.3 382 61.3
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.1e-128 463.0 422 56.4
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.4e-127 459.5 311 70.4
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 3.6e-124 449.5 311 68.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 4.7e-124 449.1 290 73.8
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.7e-122 442.2 330 69.4
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.4e-120 437.6 303 69.0
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.0e-119 433.7 311 65.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.2e-116 424.5 481 45.5
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.2e-113 413.7 448 46.9
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 4.7e-108 396.0 519 41.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.2e-106 391.3 290 64.5
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.0e-106 390.6 382 53.4
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.6e-92 343.2 237 69.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 3.7e-89 333.2 246 66.7
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.1e-88 329.7 240 67.5
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 4.9e-73 279.6 387 44.2
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 4.9e-73 279.6 200 67.0
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 5.4e-72 276.2 214 64.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 7.8e-71 272.3 336 47.6
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 7.1e-64 249.2 212 57.5
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-56 224.9 268 49.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.5e-55 220.3 166 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.6e-50 204.1 209 47.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-48 197.6 404 30.4
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 9.3e-48 195.7 190 54.7
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 5.1e-46 189.9 149 61.7
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 5.1e-46 189.9 190 53.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 5.1e-46 189.9 149 61.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 4.3e-45 186.8 118 72.9
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.1e-44 184.5 157 58.6
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.6e-44 183.7 188 51.6
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.4e-37 159.5 101 73.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.7e-33 148.3 102 66.7
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 7.1e-32 142.9 166 48.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.3e-30 138.7 230 37.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-29 135.2 166 43.4
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.8e-28 131.0 169 45.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 4.8e-28 130.2 174 46.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 6.2e-28 129.8 207 38.2
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.1e-27 129.0 86 70.9
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-26 125.6 92 59.8
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.2e-26 125.6 92 59.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.8e-26 123.2 95 65.3
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-24 118.6 205 36.6
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-22 112.5 79 65.8
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.3e-20 103.2 115 47.0
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.6e-15 88.6 91 51.6
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-14 85.9 74 56.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-13 80.1 65 61.5
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 5.0e-09 67.0 87 40.2
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.7e-07 60.5 34 82.4
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 7.9e-07 59.7 133 37.6


User provided reference genes

Program Settings