Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0499900 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 1.9e-77 292.7 186 100.0
Zm00001eb199550 Zea mays HOM05D002887 ORTHO05D003159 3.7e-28 129.0 142 52.8
Zm00001eb010350 Zea mays HOM05D003414 ORTHO05D003159 4.2e-24 115.5 152 47.4
Zm00001eb022020 Zea mays HOM05D002149 ORTHO05D002154 1.8e-22 110.2 108 55.6
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 6.3e-20 101.7 142 40.8
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 7.0e-19 98.2 96 56.2
MBI14_g10260_MAGBIO Magnolia biondii HOM05D002887 ORTHO05D003159 2.0e-18 96.7 149 35.6
Dinv19635 Davidia involucrata HOM05D002887 ORTHO05D003159 7.8e-18 94.7 150 38.0
Zm00001eb117020 Zea mays HOM05D002887 ORTHO05D003159 1.3e-17 94.0 106 51.9
Cfa016970 Carpinus fangiana HOM05D002887 ORTHO05D003159 2.3e-17 93.2 147 37.4
vmacro09794 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 2.3e-17 93.2 147 38.1
DCAR_016809 Daucus carota HOM05D002887 ORTHO05D003159 6.6e-17 91.7 140 37.1
THA.LOC104810311 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 8.6e-17 91.3 148 38.5
Haze_09925 Corylus avellana HOM05D002887 ORTHO05D003159 2.5e-16 89.7 147 36.1
Rhsim04G0006800 Rhododendron simsii HOM05D002887 ORTHO05D003159 3.3e-16 89.4 147 37.4
AL1G63640 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 4.3e-16 89.0 148 38.5
Carub.0001s4411 Capsella rubella HOM05D002887 ORTHO05D003159 4.3e-16 89.0 148 37.8
Sp1g41210 Schrenkiella parvula HOM05D002887 ORTHO05D003159 4.3e-16 89.0 148 38.5
AT1G55590 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 5.6e-16 88.6 148 37.8
Migut.H01703 Erythranthe guttata HOM05D002887 ORTHO05D003159 9.5e-16 87.8 143 33.6
GSVIVG01014858001 Vitis vinifera HOM05D002887 ORTHO05D003159 2.8e-15 86.3 147 35.4
Zm00001eb347300 Zea mays HOM05D002887 ORTHO05D003159 3.6e-15 85.9 114 48.2
A06p00120 Brassica napus HOM05D002887 ORTHO05D003159 4.7e-15 85.5 148 37.8
BraA06t23230Z Brassica rapa HOM05D002887 ORTHO05D003159 4.7e-15 85.5 148 37.8
Thhalv10011328m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 4.7e-15 85.5 148 37.8
Aa31LG10G620 Aethionema arabicum HOM05D002887 ORTHO05D003159 6.1e-15 85.1 148 37.2
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 1.0e-14 84.3 148 37.8
SGA_v2.0_scaffold49G18166 Striga asiatica HOM05D002887 ORTHO05D003159 1.4e-14 84.0 120 37.5
BcaC08g43637 Brassica carinata HOM05D002887 ORTHO05D003159 2.3e-14 83.2 148 37.2
C06p10530 Brassica napus HOM05D002887 ORTHO05D003159 2.3e-14 83.2 148 37.2
BolC6t36133H Brassica oleracea HOM05D002887 ORTHO05D003159 2.3e-14 83.2 148 37.2
SEGI_23346 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 2.3e-14 83.2 129 35.7
MSTRG.14532 Avicennia marina HOM05D002887 ORTHO05D003159 4.0e-14 82.4 122 37.7
Lj1C902G8 Lonicera japonica HOM05D002887 ORTHO05D003159 6.8e-14 81.6 140 35.7
MD11G1047600 Malus domestica HOM05D002887 ORTHO05D003159 6.8e-14 81.6 147 34.0
HPP92_003489 Vanilla planifolia HOM05D002887 ORTHO05D003159 2.0e-13 80.1 146 31.5
HPP92_026887 Vanilla planifolia HOM05D002887 ORTHO05D003159 2.0e-13 80.1 146 31.5
CSS0049070 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 3.4e-13 79.3 151 33.1
AagrBONN_evm.TU.Sc2ySwM_368.912 Anthoceros agrestis HOM05D002887 ORTHO05D003159 5.8e-13 78.6 146 34.2
CSS0039257 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 5.8e-13 78.6 154 33.8
CDE05G0350 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 1.3e-12 77.4 146 28.8
Lj5g0021290 Lotus japonicus HOM05D002887 ORTHO05D003159 1.3e-12 77.4 146 31.5
Phvul.007G016400 Phaseolus vulgaris HOM05D002887 ORTHO05D003159 1.3e-12 77.4 139 33.8
FAN21G1274 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.7e-12 77.0 139 32.4
Pp3c16_16630 Physcomitrium patens HOM05D002887 ORTHO05D003159 1.7e-12 77.0 143 31.5
Prupe.8G170700 Prunus persica HOM05D002887 ORTHO05D003159 1.7e-12 77.0 146 31.5
Atru.chr2.3909 Acer truncatum HOM05D002887 ORTHO05D003159 2.2e-12 76.6 148 33.8
SEGI_36055 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 3.7e-12 75.9 147 30.6
Actinidia20539 Actinidia chinensis HOM05D002887 ORTHO05D003159 4.9e-12 75.5 142 32.4
Lj5A175G92 Lonicera japonica HOM05D002887 ORTHO05D003159 4.9e-12 75.5 142 33.1
Medtr1g114010 Medicago truncatula HOM05D002887 ORTHO05D003159 4.9e-12 75.5 143 31.5
TAR625G0093 Trochodendron aralioides HOM05D002887 ORTHO05D003159 6.4e-12 75.1 146 30.8
Ca_03284_v3 Cicer arietinum L. HOM05D002887 ORTHO05D003159 8.3e-12 74.7 143 31.5
TPR.G2454 Trifolium pratense HOM05D002887 ORTHO05D003159 8.3e-12 74.7 143 30.1
VMungo0720G3147 Vigna mungo HOM05D002887 ORTHO05D003159 8.3e-12 74.7 139 32.4
FAN15G2445 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.1e-11 74.3 142 31.0
MD05G1127000 Malus domestica HOM05D002887 ORTHO05D003159 1.1e-11 74.3 142 30.3
RcHm_v2.0_Chr6g0279151 Rosa chinensis HOM05D002887 ORTHO05D003159 1.1e-11 74.3 142 31.0
Ciclev10007786m.g Citrus clementina HOM05D002887 ORTHO05D003159 1.4e-11 73.9 148 35.1
FAN27G1571 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.4e-11 73.9 142 30.3
ClCG09G021800 Citrullus lanatus HOM05D002887 ORTHO05D003159 1.9e-11 73.6 151 33.1
Sed0024070 Sechium edule HOM05D002887 ORTHO05D003159 2.4e-11 73.2 151 35.8
Sc08g0002650 Simmondsia chinensis HOM05D002887 ORTHO05D003159 3.2e-11 72.8 146 29.5
ATR0661G100 Amborella trichopoda HOM05D002887 ORTHO05D003159 5.4e-11 72.0 143 31.5
arahy.Tifrunner.gnm1.ann1.DJ9YQ7 Arachis hypogaea HOM05D002887 ORTHO05D003159 7.0e-11 71.6 142 30.3
arahy.Tifrunner.gnm1.ann1.HJG5YQ Arachis hypogaea HOM05D002887 ORTHO05D003159 7.0e-11 71.6 142 30.3
CSS0044899 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 7.0e-11 71.6 142 30.3
FvH4_2g15790 Fragaria vesca HOM05D002887 ORTHO05D003159 7.0e-11 71.6 142 29.6
FAN24G2689 Fragaria x ananassa HOM05D002887 ORTHO05D003159 7.0e-11 71.6 142 29.6
Rhsim11G0194600 Rhododendron simsii HOM05D002887 ORTHO05D003159 9.2e-11 71.2 142 31.7
TWI79G0907 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 9.2e-11 71.2 143 30.8
CsaV3_7G001330 Cucumis sativus L. HOM05D002887 ORTHO05D003159 1.6e-10 70.5 146 31.5
Dinv14138 Davidia involucrata HOM05D002887 ORTHO05D003159 2.0e-10 70.1 142 31.0
Glyma.20G105000 Glycine max HOM05D002887 ORTHO05D003159 2.0e-10 70.1 139 30.2
Eucgr.I01466 Eucalyptus grandis HOM05D002887 ORTHO05D003159 2.7e-10 69.7 142 28.9
CANSAT25G0878 Cannabis sativa HOM05D002887 ORTHO05D003159 3.5e-10 69.3 142 28.9
QL08p000169 Quercus lobata HOM05D002887 ORTHO05D003159 3.5e-10 69.3 114 36.8
Cpa.g.sc20.128 Carica papaya HOM05D002887 ORTHO05D003159 4.6e-10 68.9 142 28.2
Solyc07g066240.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 4.6e-10 68.9 147 29.9
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 6.0e-10 68.6 94 47.9
Lalb_Chr06g0163831 Lupinus albus HOM05D002887 ORTHO05D003159 7.8e-10 68.2 142 28.9
Gorai.008G038000 Gossypium raimondii HOM05D002887 ORTHO05D003159 1.0e-09 67.8 146 27.4
Os03g0135400 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 1.0e-09 67.8 142 28.9
Nitab4.5_0001235g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 1.3e-09 67.4 147 29.9
AUR62012987 Chenopodium quinoa HOM05D002887 ORTHO05D003159 1.7e-09 67.0 146 28.1
Potri.009G139500 Populus trichocarpa HOM05D002887 ORTHO05D003159 1.7e-09 67.0 142 28.9
COL.COLO4_18011 Corchorus olitorius HOM05D002887 ORTHO05D003159 2.3e-09 66.6 146 27.4
Gohir.D12G036800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 2.3e-09 66.6 146 26.7
HanXRQChr17g0543831 Helianthus annuus HOM05D002887 ORTHO05D003159 2.3e-09 66.6 142 27.5
EL10Ac9g21324 Beta vulgaris HOM05D002887 ORTHO05D003159 3.9e-09 65.9 146 28.8
Ciclev10028005m.g Citrus clementina HOM05D002887 ORTHO05D003159 3.9e-09 65.9 142 30.3
PSO541G1018 Papaver somniferum HOM05D002887 ORTHO05D003159 3.9e-09 65.9 146 27.4
Sopen07g034420 Solanum pennellii HOM05D002887 ORTHO05D003159 3.9e-09 65.9 122 32.0
PSO675G9002 Papaver somniferum HOM05D002887 ORTHO05D003159 5.0e-09 65.5 146 27.4
Thecc.02G053100 Theobroma cacao HOM05D002887 ORTHO05D003159 5.0e-09 65.5 146 27.4
Ah.01g023360 Amaranthus hybridus HOM05D002887 ORTHO05D003159 6.6e-09 65.1 146 27.4
Nitab4.5_0000294g0200 Nicotiana tabacum HOM05D002887 ORTHO05D003159 6.6e-09 65.1 117 33.3
THA.LOC104804318 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 6.6e-09 65.1 143 27.3
Potri.004G179571 Populus trichocarpa HOM05D002887 ORTHO05D003159 8.6e-09 64.7 142 26.8
BcaB07g33199 Brassica carinata HOM05D002887 ORTHO05D003159 1.1e-08 64.3 108 38.0
ClCG02G003820 Citrullus lanatus HOM05D002887 ORTHO05D003159 1.1e-08 64.3 103 38.8
Gohir.A12G035800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 1.1e-08 64.3 146 26.7
TWI79G0472 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 1.1e-08 64.3 146 33.6
FAN20G1407 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.5e-08 63.9 99 35.4
Hund00008 Selenicereus undatus HOM05D002887 ORTHO05D003159 1.5e-08 63.9 139 28.8
GSVIVG01023956001 Vitis vinifera HOM05D002887 ORTHO05D003159 1.9e-08 63.5 146 28.8
GSVIVG01023957001 Vitis vinifera HOM05D002887 ORTHO05D003159 1.9e-08 63.5 146 28.8
A09p11180 Brassica napus HOM05D002887 ORTHO05D003159 3.3e-08 62.8 145 27.6
BraA09t36760Z Brassica rapa HOM05D002887 ORTHO05D003159 4.3e-08 62.4 145 27.6
Peaxi162Scf00232g00091 Petunia axillaris HOM05D002887 ORTHO05D003159 4.3e-08 62.4 125 32.0
BcaC04g22994 Brassica carinata HOM05D002887 ORTHO05D003159 5.6e-08 62.0 145 27.6
C09p13220 Brassica napus HOM05D002887 ORTHO05D003159 5.6e-08 62.0 145 27.6
BolC9t54215H Brassica oleracea HOM05D002887 ORTHO05D003159 5.6e-08 62.0 145 27.6
TWI75G1235 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 5.6e-08 62.0 142 32.4
Zm00001eb402660 Zea mays HOM05D002887 ORTHO05D003159 5.6e-08 62.0 139 28.1
Manes.11G098300 Manihot esculenta HOM05D002887 ORTHO05D003159 7.3e-08 61.6 146 27.4
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 7.3e-08 61.6 139 26.6
Aa31LG8G14210 Aethionema arabicum HOM05D002887 ORTHO05D003159 9.5e-08 61.2 172 23.3
BcaB07g31745 Brassica carinata HOM05D002887 ORTHO05D003159 1.2e-07 60.8 145 27.6
Cc09_g10430 Coffea canephora HOM05D002887 ORTHO05D003159 1.2e-07 60.8 143 28.7
AL3G49810 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 2.8e-07 59.7 143 26.6
AT2G17020 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 2.8e-07 59.7 143 25.9
Carub.0003s3090 Capsella rubella HOM05D002887 ORTHO05D003159 2.8e-07 59.7 143 25.9
ECA246G2827 Erigeron canadensis HOM05D002887 ORTHO05D003159 2.8e-07 59.7 142 25.4
CAN.G623.89 Capsicum annuum HOM05D002887 ORTHO05D003159 3.6e-07 59.3 150 26.7
AUR62009999 Chenopodium quinoa HOM05D002887 ORTHO05D003159 3.6e-07 59.3 103 34.0
Nitab4.5_0003679g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 3.6e-07 59.3 142 28.2
Sp3g30310 Schrenkiella parvula HOM05D002887 ORTHO05D003159 3.6e-07 59.3 143 25.2
CAN.G623.93 Capsicum annuum HOM05D002887 ORTHO05D003159 4.7e-07 58.9 150 26.7
DCAR_022829 Daucus carota HOM05D002887 ORTHO05D003159 4.7e-07 58.9 104 34.6
Migut.B00042 Erythranthe guttata HOM05D002887 ORTHO05D003159 4.7e-07 58.9 143 27.3
Nitab4.5_0004557g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 4.7e-07 58.9 139 28.1
CARHR107340 Cardamine hirsuta HOM05D002887 ORTHO05D003159 6.2e-07 58.5 145 26.9
Cfa005310 Carpinus fangiana HOM05D002887 ORTHO05D003159 6.2e-07 58.5 143 30.1
CsaV3_7G021230 Cucumis sativus L. HOM05D002887 ORTHO05D003159 6.2e-07 58.5 157 31.2
CAN.G623.83 Capsicum annuum HOM05D002887 ORTHO05D003159 8.0e-07 58.2 143 27.3
CiPaw.05G086400 Carya illinoinensis HOM05D002887 ORTHO05D003159 8.0e-07 58.2 143 28.7
Thhalv10022585m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 8.0e-07 58.2 145 26.2
SGA_v2.0_scaffold32G13321 Striga asiatica HOM05D002887 ORTHO05D003159 1.1e-06 57.8 143 27.3
CAN.G623.99 Capsicum annuum HOM05D002887 ORTHO05D003159 3.1e-06 56.2 150 26.0
MSTRG.19965 Avicennia marina HOM05D002887 ORTHO05D003159 5.2e-06 55.5 143 26.6
Oeu029657.1 Olea europaea HOM05D002887 ORTHO05D003159 5.2e-06 55.5 95 32.6


User provided reference genes

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