Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0496400 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 5.8e-179 630.9 358 100.0
Os08g0496600 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 6.6e-58 228.8 231 61.9
Zm00001eb033920 Zea mays HOM05D002966 ORTHO05D003274 1.5e-38 164.5 208 53.4
Zm00001eb133160 Zea mays HOM05D002966 ORTHO05D003274 7.1e-28 129.0 154 65.6
Eucgr.F02000 Eucalyptus grandis HOM05D002966 ORTHO05D003274 7.2e-20 102.4 157 43.9
Prupe.6G033100 Prunus persica HOM05D002966 ORTHO05D003274 1.4e-18 98.2 154 41.6
Sabra16G0319400 Salix brachista HOM05D002966 ORTHO05D003274 1.4e-18 98.2 155 41.9
Dinv40901 Davidia involucrata HOM05D002966 ORTHO05D003274 2.3e-18 97.4 147 44.9
Potri.001G470800 Populus trichocarpa HOM05D002966 ORTHO05D003274 3.0e-18 97.1 151 41.1
Atru.chr2.3783 Acer truncatum HOM05D002966 ORTHO05D003274 3.9e-18 96.7 153 43.8
SalBow8G4530 Salvia bowleyana HOM05D002966 ORTHO05D003274 5.1e-18 96.3 150 42.0
Thecc.07G003000 Theobroma cacao HOM05D002966 ORTHO05D003274 1.1e-17 95.1 156 40.4
TAR627G0527 Trochodendron aralioides HOM05D002966 ORTHO05D003274 1.5e-17 94.7 149 42.3
HPP92_017987 Vanilla planifolia HOM05D002966 ORTHO05D003274 1.5e-17 94.7 178 41.0
Migut.M01590 Erythranthe guttata HOM05D002966 ORTHO05D003274 2.0e-17 94.4 153 41.8
Hma1.2p1_0321F.1_g124220 Hydrangea macrophylla HOM05D002966 ORTHO05D003274 3.3e-17 93.6 149 41.6
Cpa.g.sc12.79 Carica papaya HOM05D002966 ORTHO05D003274 4.3e-17 93.2 156 41.0
Potri.011G167900 Populus trichocarpa HOM05D002966 ORTHO05D003274 7.4e-17 92.4 151 39.1
Manes.01G005512 Manihot esculenta HOM05D002966 ORTHO05D003274 9.7e-17 92.0 151 41.7
Rhsim06G0234400 Rhododendron simsii HOM05D002966 ORTHO05D003274 9.7e-17 92.0 150 40.7
Ciclev10009431m.g Citrus clementina HOM05D002966 ORTHO05D003274 2.2e-16 90.9 149 42.3
FAN25G0015 Fragaria x ananassa HOM05D002966 ORTHO05D003274 2.2e-16 90.9 149 41.6
Sabra11G0138600 Salix brachista HOM05D002966 ORTHO05D003274 2.2e-16 90.9 151 39.1
Dinv19651 Davidia involucrata HOM05D002966 ORTHO05D003274 2.8e-16 90.5 149 40.9
Manes.05G205500 Manihot esculenta HOM05D002966 ORTHO05D003274 2.8e-16 90.5 151 41.1
FvH4_3g41800 Fragaria vesca HOM05D002966 ORTHO05D003274 4.8e-16 89.7 149 40.9
FAN11G0932 Fragaria x ananassa HOM05D002966 ORTHO05D003274 4.8e-16 89.7 149 40.9
MBI15_g37117_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 4.8e-16 89.7 147 39.5
RcHm_v2.0_Chr5g0074881 Rosa chinensis HOM05D002966 ORTHO05D003274 4.8e-16 89.7 154 40.9
COL.COLO4_07779 Corchorus olitorius HOM05D002966 ORTHO05D003274 1.1e-15 88.6 161 39.1
SGA_v2.0_scaffold186G40235 Striga asiatica HOM05D002966 ORTHO05D003274 1.1e-15 88.6 154 39.6
FAN16G1675 Fragaria x ananassa HOM05D002966 ORTHO05D003274 1.4e-15 88.2 149 40.3
FAN21G2136 Fragaria x ananassa HOM05D002966 ORTHO05D003274 1.4e-15 88.2 149 40.9
MSTRG.15825 Avicennia marina HOM05D002966 ORTHO05D003274 1.8e-15 87.8 150 40.0
MBI14_g43562_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 1.8e-15 87.8 148 39.2
ATR0053G034 Amborella trichopoda HOM05D002966 ORTHO05D003274 2.4e-15 87.4 149 40.3
QL08p000737 Quercus lobata HOM05D002966 ORTHO05D003274 2.4e-15 87.4 160 38.8
Solyc07g066040.1 Solanum lycopersicum HOM05D002966 ORTHO05D003274 4.1e-15 86.7 161 40.4
Sopen07g034230 Solanum pennellii HOM05D002966 ORTHO05D003274 4.1e-15 86.7 161 40.4
ClCG10G004550 Citrullus lanatus HOM05D002966 ORTHO05D003274 5.3e-15 86.3 150 38.0
Haze_09906 Corylus avellana HOM05D002966 ORTHO05D003274 9.1e-15 85.5 155 38.7
PGSC0003DMG400046514 Solanum tuberosum HOM05D002966 ORTHO05D003274 1.2e-14 85.1 161 39.8
PGR083G0197 Punica granatum HOM05D002966 ORTHO05D003274 1.5e-14 84.7 146 41.1
Sed0019904 Sechium edule HOM05D002966 ORTHO05D003274 1.5e-14 84.7 149 38.3
CsaV3_3G004370 Cucumis sativus L. HOM05D002966 ORTHO05D003274 2.0e-14 84.3 149 38.3
Sed0011072 Sechium edule HOM05D002966 ORTHO05D003274 2.0e-14 84.3 149 37.6
SEGI_34566 Sequoiadendron giganteum HOM05D002966 ORTHO05D003274 2.0e-14 84.3 154 39.0
MBI14_g12725_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 2.6e-14 84.0 148 38.5
Duzib213G0028 Durio zibethinus HOM05D002966 ORTHO05D003274 7.7e-14 82.4 156 37.8
HanXRQChr14g0431341 Helianthus annuus HOM05D002966 ORTHO05D003274 1.3e-13 81.6 152 38.8
CAN.G623.65 Capsicum annuum HOM05D002966 ORTHO05D003274 2.2e-13 80.9 161 38.5
Lj6g0000831 Lotus japonicus HOM05D002966 ORTHO05D003274 2.2e-13 80.9 157 36.9
Cc05_g15590 Coffea canephora HOM05D002966 ORTHO05D003274 2.9e-13 80.5 154 37.0
MELO3C014130.2 Cucumis melo HOM05D002966 ORTHO05D003274 3.8e-13 80.1 149 36.9
AUR62030677 Chenopodium quinoa HOM05D002966 ORTHO05D003274 5.0e-13 79.7 158 37.3
HPP92_026703 Vanilla planifolia HOM05D002966 ORTHO05D003274 5.0e-13 79.7 143 41.3
PSO478G3370 Papaver somniferum HOM05D002966 ORTHO05D003274 6.5e-13 79.3 149 37.6
AUR62024871 Chenopodium quinoa HOM05D002966 ORTHO05D003274 8.5e-13 79.0 154 38.3
Lsat_1_v5_gn_7_116241 Lactuca sativa HOM05D002966 ORTHO05D003274 8.5e-13 79.0 152 37.5
HanXRQChr05g0160161 Helianthus annuus HOM05D002966 ORTHO05D003274 1.1e-12 78.6 150 38.0
Gohir.A04G001800 Gossypium hirsutum HOM05D002966 ORTHO05D003274 1.9e-12 77.8 153 37.3
Gohir.D05G387600 Gossypium hirsutum HOM05D002966 ORTHO05D003274 1.9e-12 77.8 153 37.3
Gorai.009G454200 Gossypium raimondii HOM05D002966 ORTHO05D003274 1.9e-12 77.8 153 37.3
BcaC04g20140 Brassica carinata HOM05D002966 ORTHO05D003274 3.2e-12 77.0 151 36.4
Phvul.006G061800 Phaseolus vulgaris HOM05D002966 ORTHO05D003274 5.5e-12 76.3 158 36.1
VMungo0540G2097 Vigna mungo HOM05D002966 ORTHO05D003274 5.5e-12 76.3 158 36.7
AT5G56120 Arabidopsis thaliana HOM05D002966 ORTHO05D003274 9.4e-12 75.5 157 35.7
Carub.0008s1644 Capsella rubella HOM05D002966 ORTHO05D003274 9.4e-12 75.5 157 35.7
CARHR269500 Cardamine hirsuta HOM05D002966 ORTHO05D003274 9.4e-12 75.5 158 34.8
Medtr3g461540 Medicago truncatula HOM05D002966 ORTHO05D003274 2.1e-11 74.3 157 35.7
SHI32912 Sapria himalayana HOM05D002966 ORTHO05D003274 2.1e-11 74.3 154 33.8
Sp6g17970 Schrenkiella parvula HOM05D002966 ORTHO05D003274 2.7e-11 73.9 149 36.2
CiPaw.12G142200 Carya illinoinensis HOM05D002966 ORTHO05D003274 3.6e-11 73.6 142 35.2
Nn1g07663 Nelumbo nucifera HOM05D002966 ORTHO05D003274 6.1e-11 72.8 68 52.9
arahy.Tifrunner.gnm1.ann1.2YA2DE Arachis hypogaea HOM05D002966 ORTHO05D003274 7.9e-11 72.4 157 35.0
arahy.Tifrunner.gnm1.ann1.E7G0ZI Arachis hypogaea HOM05D002966 ORTHO05D003274 7.9e-11 72.4 157 35.0
Glyma.08G336300 Glycine max HOM05D002966 ORTHO05D003274 7.9e-11 72.4 152 36.2
TPR.G14730 Trifolium pratense HOM05D002966 ORTHO05D003274 1.0e-10 72.0 161 34.8
Glyma.18G071400 Glycine max HOM05D002966 ORTHO05D003274 1.4e-10 71.6 154 35.7
Ca_14869_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 1.8e-10 71.2 157 34.4
TWI38G1586 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 2.3e-10 70.9 154 35.7
Ah.12g063900 Amaranthus hybridus HOM05D002966 ORTHO05D003274 3.0e-10 70.5 152 35.5
Aa31LG3G12030 Aethionema arabicum HOM05D002966 ORTHO05D003274 3.9e-10 70.1 157 34.4
Psat5g164040 Pisum sativum HOM05D002966 ORTHO05D003274 3.9e-10 70.1 152 34.9
SEGI_38004 Sequoiadendron giganteum HOM05D002966 ORTHO05D003274 3.9e-10 70.1 146 34.2
TWI38G2168 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 6.7e-10 69.3 150 36.7
BolC9t57584H Brassica oleracea HOM05D002966 ORTHO05D003274 1.5e-09 68.2 155 34.2
C09p47270 Brassica napus HOM05D002966 ORTHO05D003274 2.0e-09 67.8 151 34.4
CANSAT11G1295 Cannabis sativa HOM05D002966 ORTHO05D003274 2.6e-09 67.4 155 32.9
AL8G31750 Arabidopsis lyrata HOM05D002966 ORTHO05D003274 5.7e-09 66.2 157 33.8
Thhalv10014555m.g Eutrema salsugineum HOM05D002966 ORTHO05D003274 5.7e-09 66.2 157 33.8
Oeu013012.1 Olea europaea HOM05D002966 ORTHO05D003274 5.7e-09 66.2 152 37.5
THA.LOC104811695 Tarenaya hassleriana HOM05D002966 ORTHO05D003274 7.4e-09 65.9 164 34.1
HanXRQChr13g0390521 Helianthus annuus HOM05D002966 ORTHO05D003274 2.2e-08 64.3 66 54.5
PSO675G7699 Papaver somniferum HOM05D002966 ORTHO05D003274 2.8e-08 63.9 148 35.1
Zm00001eb213650 Zea mays HOM05D002966 ORTHO05D003274 3.7e-08 63.5 159 37.1
PSO541G5304 Papaver somniferum HOM05D002966 ORTHO05D003274 6.3e-08 62.8 148 33.8
Lj8P182T56 Lonicera japonica HOM05D002966 ORTHO05D003274 1.4e-07 61.6 146 34.2
Lalb_Chr15g0082511 Lupinus albus HOM05D002966 ORTHO05D003274 2.4e-07 60.8 71 45.1
CSS0049951 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 3.1e-07 60.5 161 31.1
CSS0042760 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 4.1e-07 60.1 161 31.1
Os03g0778400 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 4.1e-07 60.1 160 36.9
BcaB08g35977 Brassica carinata HOM05D002966 ORTHO05D003274 5.3e-07 59.7 157 32.5
HPP92_000947 Vanilla planifolia HOM05D002966 ORTHO05D003274 4.5e-06 56.6 66 45.5


User provided reference genes

Program Settings