Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1754.2 850 100.0
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1460.3 847 83.4
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1166.8 836 64.7
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1149.8 847 64.7
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1148.7 840 65.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 841 65.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 839 65.3
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1142.9 838 64.2
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1142.5 838 64.6
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 831 65.5
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1137.5 831 64.6
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1137.5 831 65.1
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1136.7 837 64.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 831 64.7
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 837 64.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1134.0 831 64.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1132.5 831 64.0
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1132.1 831 64.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1131.7 839 65.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1131.3 832 64.1
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1130.9 830 64.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1129.8 832 63.7
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1129.0 839 63.2
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 834 63.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 832 63.6
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 829 63.6
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1127.9 839 63.9
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1124.8 831 63.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1122.1 831 63.2
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1119.4 837 63.2
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1118.6 830 64.1
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1117.4 830 64.1
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1117.1 836 63.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1117.1 842 61.8
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1116.3 836 63.5
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1115.9 834 62.9
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1114.0 829 64.1
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1113.2 836 62.3
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1113.2 830 62.7
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1112.1 833 62.5
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1111.3 839 62.3
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1110.9 835 63.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1109.0 830 62.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1108.6 837 63.2
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1107.4 839 62.2
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1106.7 837 61.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1106.7 839 62.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1106.3 842 62.1
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1103.2 836 62.4
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1102.0 830 62.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1101.7 831 63.2
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1100.5 831 62.1
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1099.3 839 62.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1099.0 829 63.4
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1099.0 826 63.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1096.6 826 62.7
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1096.3 831 61.7
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1095.5 830 61.4
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1095.5 830 62.2
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1095.1 833 63.6
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1094.3 836 62.3
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1093.6 841 63.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1092.8 836 62.4
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1092.0 839 62.7
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1091.6 838 61.8
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1090.1 840 62.1
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1090.1 834 62.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1089.3 844 62.1
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1080.1 840 61.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1077.8 851 61.2
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.5e-310 1069.3 868 60.0
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 8.3e-309 1063.5 969 54.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.2e-307 1059.7 850 59.8
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 5.9e-307 1057.4 834 61.3
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 7.8e-307 1057.0 840 60.6
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 2.9e-306 1055.0 835 61.1
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 1.1e-305 1053.1 834 61.2
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 3.3e-305 1051.6 835 61.0
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 4.3e-305 1051.2 836 61.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.6e-304 1049.3 835 61.2
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.8e-304 1048.5 842 60.5
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 8.0e-304 1047.0 852 59.5
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.8e-303 1045.8 833 60.6
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 2.3e-303 1045.4 840 60.2
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 8.9e-303 1043.5 842 59.6
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.3e-301 1039.6 942 55.4
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.7e-301 1039.3 840 60.1
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 3.7e-301 1038.1 840 60.2
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 4.9e-301 1037.7 834 60.7
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 4.1e-300 1034.6 834 59.6
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.0e-300 1033.9 787 64.3
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 3.9e-298 1028.1 833 59.4
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 2.5e-297 1025.4 842 59.5
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 6.2e-296 1020.8 733 65.3
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 7.8e-291 1003.8 835 58.8
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.4e-287 993.0 758 61.7
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 4.4e-270 934.9 828 55.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.9e-260 902.9 665 64.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 3.2e-252 875.5 896 50.3
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.6e-243 846.7 853 50.4
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.1e-239 833.9 607 63.4
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.9e-238 828.2 579 66.3
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.8e-234 816.6 859 48.9
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 1.3e-224 783.9 835 49.2
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.9e-204 716.8 830 46.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.1e-158 563.9 403 66.0
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 9.0e-154 548.5 400 63.8
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 5.3e-146 522.7 466 54.5
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.0e-133 481.9 354 62.7
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.6e-126 456.4 350 62.0
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.0e-108 397.9 263 69.6
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.8e-101 374.8 872 31.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 4.8e-99 366.7 1177 26.9
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 8.8e-93 345.9 785 32.1
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.3e-91 342.0 304 54.9
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.8e-90 338.2 266 59.8
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 4.2e-87 327.0 836 30.4
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.1e-86 324.7 479 43.2
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.4e-82 310.1 195 68.7
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.3e-80 304.7 196 73.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 3.8e-80 303.9 304 54.3
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-79 302.4 229 62.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 5.7e-76 290.0 202 67.8
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.0e-64 251.1 241 51.9
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 6.8e-61 240.0 256 50.4
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 7.8e-49 199.9 197 52.3
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.7e-40 172.2 165 50.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.7e-40 172.2 165 50.9
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.8e-38 164.1 144 53.5
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.0e-32 144.8 101 64.4
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.3e-27 129.4 100 59.0
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 4.9e-27 127.5 90 62.2
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.6e-25 122.5 186 38.2
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 5.1e-24 117.5 101 52.5
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.5e-23 115.9 76 68.4
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.1e-22 112.1 64 73.4
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.9e-21 107.1 68 72.1
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.0e-20 105.5 69 66.7
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.6e-20 105.1 107 54.2
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 2.1e-17 95.5 106 50.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.0e-16 91.7 56 73.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.5e-15 89.4 66 57.6
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.5e-15 88.6 53 64.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.3e-14 86.3 64 62.5
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 2.4e-13 82.0 94 46.8
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 7.7e-12 77.0 59 49.2
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 5.1e-08 64.3 101 35.6
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 5.1e-08 64.3 180 26.7
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.5e-07 62.0 63 44.4
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 4.3e-07 61.2 180 26.1
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 5.7e-07 60.8 206 25.2
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 1.3e-06 59.7 120 30.8
BcaC07g39390 Brassica carinata HOM05D002332 ORTHO05D002509 3.7e-06 58.2 128 28.9
C08p24150 Brassica napus HOM05D002332 ORTHO05D002509 3.7e-06 58.2 128 28.9
BolC8t50036H Brassica oleracea HOM05D002332 ORTHO05D002509 3.7e-06 58.2 128 28.9
CANSAT25G1395 Cannabis sativa HOM05D002634 ORTHO05D003100 4.8e-06 57.8 138 29.7
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 4.8e-06 57.8 120 27.5
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 8.2e-06 57.0 180 26.1
Cfa026486 Carpinus fangiana HOM05D002410 ORTHO05D002805 8.2e-06 57.0 124 29.8
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 8.2e-06 57.0 120 27.5


User provided reference genes

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