Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0493100 Oryza sativa ssp. japonica HOM05D064105 ORTHO05D049496 3.9e-273 944.1 450 100.0
Os12g0492900 Oryza sativa ssp. japonica HOM05D064105 ORTHO05D049496 6.2e-45 186.0 414 34.8
FvH4_3g40660 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-11 75.1 363 25.6
FAN16G3614 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-11 75.1 363 25.6
FAN11G2499 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-11 74.7 363 25.6
Eucgr.K00668 Eucalyptus grandis HOM05D000007 ORTHO05D000521 4.5e-11 73.6 274 27.0
PSO832G3430 Papaver somniferum HOM05D000007 ORTHO05D000676 4.5e-11 73.6 263 28.1
AL3G19240 Arabidopsis lyrata HOM05D000007 ORTHO05D000521 5.8e-11 73.2 328 24.1
Thhalv10020831m.g Eutrema salsugineum HOM05D000007 ORTHO05D000521 5.8e-11 73.2 334 24.3
PSO782G1641 Papaver somniferum HOM05D000007 ORTHO05D000676 7.6e-11 72.8 280 27.1
COL.COLO4_25431 Corchorus olitorius HOM05D000007 ORTHO05D000521 1.0e-10 72.4 255 25.9
Sp3g06790 Schrenkiella parvula HOM05D000007 ORTHO05D000521 1.7e-10 71.6 315 24.8
PSO566G0150 Papaver somniferum HOM05D000007 ORTHO05D000676 2.2e-10 71.2 245 26.9
Aqoxy4G00563 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 2.9e-10 70.9 318 24.5
Cpa.g.sc136.5 Carica papaya HOM05D000007 ORTHO05D000521 2.9e-10 70.9 338 23.4
PSO675G4194 Papaver somniferum HOM05D000007 ORTHO05D000676 3.8e-10 70.5 280 28.2
Potri.001G224200 Populus trichocarpa HOM05D000007 ORTHO05D000521 8.4e-10 69.3 307 25.4
AT3G07870 Arabidopsis thaliana HOM05D000007 ORTHO05D000521 1.1e-09 68.9 332 23.5
QL04p045051 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-09 68.9 204 28.9
TAR624G0230 Trochodendron aralioides HOM05D000007 ORTHO05D000676 1.1e-09 68.9 249 26.9
Carub.0003s0745 Capsella rubella HOM05D000007 ORTHO05D000521 1.4e-09 68.6 333 23.7
Eucgr.H02731 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.4e-09 68.6 260 27.7
PGR042G2235 Punica granatum HOM05D000007 ORTHO05D000039 1.4e-09 68.6 258 31.4
PSO135G0022 Papaver somniferum HOM05D000007 ORTHO05D000676 1.9e-09 68.2 219 30.6
PSO832G0591 Papaver somniferum HOM05D000007 ORTHO05D000676 1.9e-09 68.2 259 23.9
RcHm_v2.0_Chr2g0167131 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-09 67.8 244 26.6
Eucgr.H02715 Eucalyptus grandis HOM05D000007 ORTHO05D000017 3.2e-09 67.4 260 27.7
C03p43160 Brassica napus HOM05D000007 ORTHO05D000521 4.2e-09 67.0 263 25.5
BolC3t16585H Brassica oleracea HOM05D000007 ORTHO05D000521 4.2e-09 67.0 263 25.5
Aqoxy4G00227 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 5.5e-09 66.6 329 22.8
PGR042G0166 Punica granatum HOM05D000007 ORTHO05D000039 5.5e-09 66.6 374 24.3
A03p35500 Brassica napus HOM05D000007 ORTHO05D000521 7.1e-09 66.2 263 25.5
BraA03t12727Z Brassica rapa HOM05D000007 ORTHO05D000521 7.1e-09 66.2 263 25.5
CARHR082600 Cardamine hirsuta HOM05D000007 ORTHO05D000521 7.1e-09 66.2 331 23.6
Medtr5g007940 Medicago truncatula HOM05D000007 ORTHO05D000521 7.1e-09 66.2 203 25.6
PGR042G0354 Punica granatum HOM05D000007 ORTHO05D000039 7.1e-09 66.2 263 24.7
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 9.3e-09 65.9 350 25.1
CSS0020981 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000676 9.3e-09 65.9 303 24.1
Nn1g00748 Nelumbo nucifera HOM05D000007 ORTHO05D000017 9.3e-09 65.9 344 25.0
DCAR_004837 Daucus carota HOM05D000007 ORTHO05D000039 1.2e-08 65.5 368 23.1
PSO063G1960 Papaver somniferum HOM05D000007 ORTHO05D000676 1.2e-08 65.5 258 27.1
PSO541G3012 Papaver somniferum HOM05D000007 ORTHO05D000017 1.2e-08 65.5 236 25.8
Gorai.001G219500 Gossypium raimondii HOM05D000007 ORTHO05D000521 1.6e-08 65.1 267 24.3
Gohir.D07G196000 Gossypium hirsutum HOM05D000007 ORTHO05D000521 2.1e-08 64.7 267 24.3
PSO566G0027 Papaver somniferum HOM05D000007 ORTHO05D000676 2.1e-08 64.7 265 26.0
PSO675G2381 Papaver somniferum HOM05D000007 ORTHO05D000017 2.1e-08 64.7 311 23.8
PSO801G0842 Papaver somniferum HOM05D000007 ORTHO05D000676 2.1e-08 64.7 292 26.4
Solyc05g010500.1 Solanum lycopersicum HOM05D000007 ORTHO05D000521 2.1e-08 64.7 247 23.9
FAN02G3460 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.7e-08 64.3 249 29.3
COL.COLO4_25853 Corchorus olitorius HOM05D000007 ORTHO05D000521 3.5e-08 63.9 398 21.6
Atru.chr4.13 Acer truncatum HOM05D000007 ORTHO05D000521 4.6e-08 63.5 207 28.0
Eucgr.L03420 Eucalyptus grandis HOM05D000007 ORTHO05D003666 4.6e-08 63.5 290 29.0
PGSC0003DMG400046868 Solanum tuberosum HOM05D000007 ORTHO05D000521 4.6e-08 63.5 317 24.0
COL.COLO4_25859 Corchorus olitorius HOM05D000007 ORTHO05D000521 6.1e-08 63.2 252 26.6
RcHm_v2.0_Chr4g0391071 Rosa chinensis HOM05D000007 ORTHO05D000017 6.1e-08 63.2 286 27.3
Ciclev10028624m.g Citrus clementina HOM05D000007 ORTHO05D000521 7.9e-08 62.8 257 28.0
Dinv17447 Davidia involucrata HOM05D000007 ORTHO05D000676 7.9e-08 62.8 165 27.3
PSO017G5609 Papaver somniferum HOM05D000007 ORTHO05D000676 7.9e-08 62.8 265 29.1
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 7.9e-08 62.8 242 28.1
Dinv05357 Davidia involucrata HOM05D000007 ORTHO05D000521 1.0e-07 62.4 264 22.7
PSO566G0334 Papaver somniferum HOM05D000007 ORTHO05D000676 1.0e-07 62.4 261 26.1
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.0e-07 62.4 208 29.3
Gohir.D07G173800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.3e-07 62.0 295 22.7
HanXRQChr01g0010851 Helianthus annuus HOM05D000007 ORTHO05D000521 1.3e-07 62.0 269 26.0
Medtr7g117100 Medicago truncatula HOM05D000007 ORTHO05D000521 1.3e-07 62.0 172 29.1
QL04p045563 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-07 62.0 266 24.8
CSS0034442 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 1.8e-07 61.6 237 27.4
FvH4_3g32340 Fragaria vesca HOM05D000007 ORTHO05D000017 1.8e-07 61.6 239 26.4
Hma1.2p1_1532F.1_g289300 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 1.8e-07 61.6 317 22.4
PSO063G7349 Papaver somniferum HOM05D000007 ORTHO05D000676 1.8e-07 61.6 228 27.2
RcHm_v2.0_Chr2g0153011 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-07 61.6 250 29.6
PSO063G5494 Papaver somniferum HOM05D000007 ORTHO05D000676 2.3e-07 61.2 260 25.8
PSO500G0084 Papaver somniferum HOM05D000007 ORTHO05D000676 2.3e-07 61.2 197 29.4
QL08p029175 Quercus lobata HOM05D000007 ORTHO05D000521 2.3e-07 61.2 164 30.5
Sabra11G0123100 Salix brachista HOM05D000007 ORTHO05D000521 2.3e-07 61.2 333 21.3
PGSC0003DMG400036030 Solanum tuberosum HOM05D000007 ORTHO05D000521 2.3e-07 61.2 202 26.2
CiPaw.07G024100 Carya illinoinensis HOM05D000007 ORTHO05D000039 3.0e-07 60.8 266 25.6
CiPaw.14G025300 Carya illinoinensis HOM05D000007 ORTHO05D000039 3.0e-07 60.8 256 27.3
DCAR_019705 Daucus carota HOM05D000372 ORTHO05D000948 3.0e-07 60.8 191 28.3
Hma1.2p1_2053F.1_g312720 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 3.0e-07 60.8 317 22.4
Medtr4g133170 Medicago truncatula HOM05D000007 ORTHO05D000017 3.0e-07 60.8 274 24.5
arahy.Tifrunner.gnm1.ann1.WH98T7 Arachis hypogaea HOM05D000007 ORTHO05D000017 3.9e-07 60.5 203 27.1
ECA236G3121 Erigeron canadensis HOM05D000007 ORTHO05D000521 3.9e-07 60.5 267 25.1
Prupe.3G112000 Prunus persica HOM05D000007 ORTHO05D000521 3.9e-07 60.5 174 28.2
PSO732G0690 Papaver somniferum HOM05D000007 ORTHO05D000676 5.1e-07 60.1 193 25.9
Rhsim03G0265900 Rhododendron simsii HOM05D000007 ORTHO05D000039 5.1e-07 60.1 256 24.2
SalBow7G3538 Salvia bowleyana HOM05D000007 ORTHO05D000039 5.1e-07 60.1 358 22.9
PGSC0003DMG400040165 Solanum tuberosum HOM05D000007 ORTHO05D000521 5.1e-07 60.1 157 29.3
vmacro05999 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.1e-07 60.1 361 23.5
arahy.Tifrunner.gnm1.ann1.F3ZHRM Arachis hypogaea HOM05D000007 ORTHO05D000017 6.7e-07 59.7 351 25.1
Haze_13260 Corylus avellana HOM05D000007 ORTHO05D000039 6.7e-07 59.7 276 26.1
Dinv24453 Davidia involucrata HOM05D000007 ORTHO05D000039 6.7e-07 59.7 341 24.3
FvH4_6g39180 Fragaria vesca HOM05D000007 ORTHO05D000017 6.7e-07 59.7 202 30.7
Hma1.2p1_0270F.1_g108160 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 6.7e-07 59.7 200 24.5
MD09G1119500 Malus domestica HOM05D000007 ORTHO05D000521 6.7e-07 59.7 325 23.4
RcHm_v2.0_Chr4g0412631 Rosa chinensis HOM05D000007 ORTHO05D000521 6.7e-07 59.7 305 22.6
Thecc.01G185500 Theobroma cacao HOM05D000007 ORTHO05D000521 6.7e-07 59.7 321 21.5
TWI18G1015 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 6.7e-07 59.7 319 21.6
TWI60G0843 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 6.7e-07 59.7 260 23.8
arahy.Tifrunner.gnm1.ann1.DDZ1HR Arachis hypogaea HOM05D000007 ORTHO05D000017 8.7e-07 59.3 351 25.4
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 8.7e-07 59.3 363 24.2
Zm00001eb311420 Zea mays HOM05D000007 ORTHO05D000017 8.7e-07 59.3 130 33.1
Aqoxy4G00228 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 1.1e-06 58.9 214 24.8
Dinv05294 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-06 58.9 217 26.7
PSO700G0020 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-06 58.9 311 23.8
Prupe.3G112200 Prunus persica HOM05D000007 ORTHO05D000521 1.1e-06 58.9 217 25.3
Rhsim06G0172600 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.1e-06 58.9 202 28.2
TWI18G1020 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 1.1e-06 58.9 267 25.8
Ciclev10017685m.g Citrus clementina HOM05D000007 ORTHO05D000521 1.5e-06 58.5 258 22.9
Migut.N00868 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.5e-06 58.5 232 25.9
FAN12G0768 Fragaria x ananassa HOM05D000007 ORTHO05D000521 1.5e-06 58.5 264 23.9
Lsat_1_v5_gn_7_95360 Lactuca sativa HOM05D000007 ORTHO05D000521 1.5e-06 58.5 334 21.6
PSO824G0099 Papaver somniferum HOM05D000007 ORTHO05D000676 1.5e-06 58.5 249 25.3
Potri.011G037312 Populus trichocarpa HOM05D000007 ORTHO05D000521 1.5e-06 58.5 264 22.3
RcHm_v2.0_Chr2g0154711 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-06 58.5 247 26.7
TWI75G1848 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 1.5e-06 58.5 346 23.7
GSVIVG01008137001 Vitis vinifera HOM05D000007 ORTHO05D007631 1.5e-06 58.5 263 24.3
Dinv05849 Davidia involucrata HOM05D000007 ORTHO05D000521 1.9e-06 58.2 243 26.3
FAN14G0847 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.9e-06 58.2 173 31.8
PSO675G6799 Papaver somniferum HOM05D000007 ORTHO05D000676 1.9e-06 58.2 301 22.6
PSO832G0873 Papaver somniferum HOM05D000007 ORTHO05D000676 1.9e-06 58.2 254 27.6
Prupe.3G191300 Prunus persica HOM05D000007 ORTHO05D000017 1.9e-06 58.2 255 23.1
Rhsim01G0072600 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.9e-06 58.2 238 24.4
Thecc.04G197700 Theobroma cacao HOM05D000007 ORTHO05D000017 1.9e-06 58.2 348 25.3
TPR.G33734 Trifolium pratense HOM05D000007 ORTHO05D000521 1.9e-06 58.2 165 27.3
DCAR_019704 Daucus carota HOM05D000007 ORTHO05D000521 2.5e-06 57.8 268 23.5
Gohir.A07G189800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 2.5e-06 57.8 267 23.6
Potri.011G037200 Populus trichocarpa HOM05D000007 ORTHO05D000521 2.5e-06 57.8 264 22.3
Potri.011G137200 Populus trichocarpa HOM05D000007 ORTHO05D000521 2.5e-06 57.8 344 22.4
RcHm_v2.0_Chr1g0328801 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-06 57.8 268 25.0
RcHm_v2.0_Chr5g0061011 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-06 57.8 322 23.3
Haze_02867 Corylus avellana HOM05D000007 ORTHO05D000039 3.3e-06 57.4 263 25.5
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 3.3e-06 57.4 258 26.4
FAN05G3133 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.3e-06 57.4 177 27.1
Lj1P673T32 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-06 57.4 243 25.9
Manes.15G021000 Manihot esculenta HOM05D000007 ORTHO05D000017 3.3e-06 57.4 253 24.9
QL04p037158 Quercus lobata HOM05D000007 ORTHO05D000039 3.3e-06 57.4 332 23.5
Solyc05g010490.1 Solanum lycopersicum HOM05D000007 ORTHO05D000521 3.3e-06 57.4 205 27.8
Eucgr.H02931 Eucalyptus grandis HOM05D000007 ORTHO05D000017 4.3e-06 57.0 316 23.7
FAN05G1384 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-06 57.0 249 28.5
MD10G1332600 Malus domestica HOM05D000007 ORTHO05D000017 4.3e-06 57.0 339 23.6
PSO386G0261 Papaver somniferum HOM05D000007 ORTHO05D000676 4.3e-06 57.0 372 22.6
Prupe.1G168000 Prunus persica HOM05D000007 ORTHO05D000521 4.3e-06 57.0 151 30.5
RcHm_v2.0_Chr2g0154541 Rosa chinensis HOM05D000007 ORTHO05D000017 4.3e-06 57.0 273 24.5
TWI59G1353 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.3e-06 57.0 271 24.7
AUR62012551 Chenopodium quinoa HOM05D000007 ORTHO05D000017 5.7e-06 56.6 230 26.5
Lj1P670T34 Lonicera japonica HOM05D000007 ORTHO05D000039 5.7e-06 56.6 243 25.9
PSO063G2534 Papaver somniferum HOM05D000007 ORTHO05D000676 5.7e-06 56.6 275 25.1
PSO675G2394 Papaver somniferum HOM05D000007 ORTHO05D000017 5.7e-06 56.6 80 38.8
PSO675G5901 Papaver somniferum HOM05D000007 ORTHO05D000017 5.7e-06 56.6 80 38.8
TPR.G29403 Trifolium pratense HOM05D000007 ORTHO05D000521 5.7e-06 56.6 169 27.8
Haze_03009 Corylus avellana HOM05D000007 ORTHO05D000039 7.4e-06 56.2 152 29.6
Rhsim12G0150000 Rhododendron simsii HOM05D000007 ORTHO05D000676 7.4e-06 56.2 250 24.4
COL.COLO4_13967 Corchorus olitorius HOM05D000007 ORTHO05D000521 9.7e-06 55.8 322 20.2
Medtr5g021860 Medicago truncatula HOM05D000007 ORTHO05D000521 9.7e-06 55.8 205 25.9
PSO732G0133 Papaver somniferum HOM05D000007 ORTHO05D000676 9.7e-06 55.8 152 31.6
RcHm_v2.0_Chr2g0154611 Rosa chinensis HOM05D000007 ORTHO05D000017 9.7e-06 55.8 318 24.8
Thecc.04G197500 Theobroma cacao HOM05D000007 ORTHO05D000017 9.7e-06 55.8 320 24.4


User provided reference genes

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