Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.1e-83 313.2 153 100.0
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.0e-44 182.2 119 73.9
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 6.8e-36 154.5 123 64.2
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 7.3e-22 107.8 104 53.8
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 2.1e-21 106.3 103 54.4
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 2.1e-21 106.3 132 44.7
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 2.8e-21 105.9 104 52.9
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 6.2e-21 104.8 103 52.4
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 8.1e-21 104.4 103 51.5
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 8.1e-21 104.4 106 50.9
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.1e-20 104.0 102 52.0
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 1.4e-20 103.6 102 53.9
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.4e-20 103.6 102 51.0
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.8e-20 103.2 103 52.4
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 2.3e-20 102.8 103 52.4
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 2.3e-20 102.8 103 53.4
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 2.3e-20 102.8 103 52.4
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 3.1e-20 102.4 103 54.4
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 4.0e-20 102.1 103 52.4
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 5.2e-20 101.7 103 53.4
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 5.2e-20 101.7 109 46.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.8e-20 101.3 103 50.5
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 6.8e-20 101.3 103 52.4
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 8.9e-20 100.9 102 52.0
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.2e-19 100.5 102 52.0
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 1.2e-19 100.5 103 51.5
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.2e-19 100.5 103 48.5
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 1.5e-19 100.1 118 47.5
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.5e-19 100.1 103 52.4
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 2.0e-19 99.8 104 50.0
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 2.0e-19 99.8 103 50.5
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 2.6e-19 99.4 103 49.5
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 2.6e-19 99.4 104 53.8
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 2.6e-19 99.4 103 51.5
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 3.4e-19 99.0 103 50.5
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 3.4e-19 99.0 103 50.5
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 3.4e-19 99.0 103 50.5
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 3.4e-19 99.0 103 50.5
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 3.4e-19 99.0 102 50.0
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.4e-19 99.0 103 51.5
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 3.4e-19 99.0 103 50.5
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 4.4e-19 98.6 103 50.5
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.4e-19 98.6 103 51.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 4.4e-19 98.6 104 49.0
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 4.4e-19 98.6 103 47.6
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 5.8e-19 98.2 104 49.0
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 5.8e-19 98.2 106 49.1
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 5.8e-19 98.2 104 49.0
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 5.8e-19 98.2 103 51.5
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 7.5e-19 97.8 103 50.5
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 7.5e-19 97.8 106 49.1
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 7.5e-19 97.8 103 51.5
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 9.8e-19 97.4 103 50.5
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 1.3e-18 97.1 103 49.5
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 1.3e-18 97.1 103 49.5
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 1.3e-18 97.1 103 49.5
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.3e-18 97.1 107 49.5
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 1.3e-18 97.1 103 50.5
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.7e-18 96.7 113 46.9
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 1.7e-18 96.7 112 47.3
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 1.7e-18 96.7 103 50.5
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 2.2e-18 96.3 103 48.5
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 2.2e-18 96.3 103 48.5
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 2.9e-18 95.9 109 47.7
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 2.9e-18 95.9 103 48.5
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 3.7e-18 95.5 103 45.6
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.9e-18 95.1 103 49.5
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 6.4e-18 94.7 103 46.6
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 6.4e-18 94.7 104 49.0
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 6.4e-18 94.7 103 49.5
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 8.3e-18 94.4 104 50.0
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 8.3e-18 94.4 103 47.6
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.1e-17 94.0 103 50.5
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 1.9e-17 93.2 104 48.1
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 2.4e-17 92.8 103 47.6
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 2.4e-17 92.8 113 46.9
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 4.1e-17 92.0 103 45.6
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 5.4e-17 91.7 103 47.6
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 5.4e-17 91.7 104 47.1
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 5.4e-17 91.7 104 47.1
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 2.1e-16 89.7 103 45.6
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 2.1e-16 89.7 103 46.6
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 3.5e-16 89.0 103 47.6
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 7.8e-16 87.8 103 48.5
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.3e-15 87.0 103 47.6
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 1.3e-15 87.0 101 47.5
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 3.9e-15 85.5 103 45.6
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 5.1e-15 85.1 103 42.7
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 8.6e-15 84.3 103 47.6
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 1.9e-14 83.2 101 47.5
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 3.3e-14 82.4 105 41.9
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 3.3e-14 82.4 101 44.6
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 9.5e-14 80.9 104 40.4
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.5e-11 73.6 67 50.7
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 2.0e-11 73.2 103 37.9
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 5.8e-11 71.6 90 46.7
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 9.9e-11 70.9 103 40.8
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.6e-08 63.5 103 34.0
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 3.5e-08 62.4 59 54.2
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 5.1e-07 58.5 78 41.0
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 8.6e-07 57.8 71 43.7
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 5.6e-06 55.1 58 51.7


User provided reference genes

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