Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 9.4e-223 776.5 395 100.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.1e-162 577.0 424 70.8
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 4.5e-156 555.1 424 68.2
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.1e-154 550.4 429 66.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.7e-145 519.2 415 64.8
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 6.3e-118 428.3 422 52.8
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 6.3e-118 428.3 422 53.3
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.7e-115 420.2 422 52.4
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.8e-115 419.1 422 51.2
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.1e-113 413.3 391 54.0
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.0e-112 411.0 422 50.5
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.0e-112 409.5 422 51.4
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.0e-112 409.5 422 50.9
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 3.9e-112 409.1 422 50.5
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.3e-110 404.1 422 50.5
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.7e-110 403.7 422 50.5
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.7e-110 403.7 422 50.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.2e-110 403.3 420 51.2
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.2e-110 403.3 422 50.5
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 6.3e-110 401.7 424 49.8
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 6.3e-110 401.7 422 50.5
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 8.2e-110 401.4 422 50.2
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.1e-109 401.0 420 50.2
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.1e-109 401.0 422 50.7
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.8e-109 400.2 422 49.8
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.4e-109 399.8 422 50.5
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.4e-109 399.8 422 50.0
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.1e-109 399.1 422 49.5
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 4.1e-109 399.1 422 50.0
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 4.1e-109 399.1 421 49.2
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 5.3e-109 398.7 420 49.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 5.3e-109 398.7 422 49.3
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.0e-109 398.3 422 49.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 7.0e-109 398.3 422 49.1
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 7.0e-109 398.3 422 49.1
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 7.0e-109 398.3 422 49.8
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 9.1e-109 397.9 422 50.5
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.2e-108 397.5 422 49.8
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.0e-108 396.7 422 49.5
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.6e-108 396.4 422 49.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.5e-108 396.0 422 50.2
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 3.5e-108 396.0 422 50.2
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 7.7e-108 394.8 422 49.3
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 7.7e-108 394.8 427 49.9
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.0e-107 394.4 422 48.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.3e-107 394.0 422 48.6
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.3e-107 394.0 422 48.8
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.2e-107 393.3 427 49.6
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.2e-107 393.3 422 49.1
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 3.8e-107 392.5 422 49.5
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.5e-107 391.3 422 49.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 8.5e-107 391.3 422 48.8
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.5e-106 390.6 412 48.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.5e-106 390.6 422 49.5
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.9e-106 390.2 422 48.8
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.9e-106 390.2 422 48.6
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.5e-106 389.8 427 48.2
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 3.2e-106 389.4 422 48.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.2e-106 389.4 422 48.1
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 5.5e-106 388.7 423 49.6
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 5.5e-106 388.7 422 49.3
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 7.2e-106 388.3 422 47.6
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 7.2e-106 388.3 422 48.8
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 9.4e-106 387.9 422 49.1
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.1e-105 386.7 422 48.1
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.7e-105 386.3 422 47.9
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.7e-105 386.3 425 49.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.6e-105 386.0 422 48.1
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.1e-105 385.2 422 48.1
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 8.0e-105 384.8 422 48.1
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.4e-104 384.0 422 47.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.4e-104 384.0 422 49.1
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.4e-104 384.0 427 48.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.3e-104 383.3 410 49.3
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 8.8e-104 381.3 422 47.9
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 8.8e-104 381.3 422 47.9
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 8.8e-104 381.3 423 48.2
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.2e-103 380.9 423 47.5
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.2e-103 380.9 421 48.5
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.6e-103 379.8 423 48.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.6e-103 379.8 422 47.4
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.6e-103 379.8 421 48.2
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 2.6e-103 379.8 422 47.6
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.6e-103 379.8 423 47.8
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 7.5e-103 378.3 420 50.2
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 9.7e-103 377.9 423 46.6
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.8e-102 376.3 423 47.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.8e-102 376.3 422 48.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 3.7e-102 375.9 408 48.8
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 3.7e-102 375.9 407 49.1
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.7e-102 375.9 426 48.4
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 4.8e-102 375.6 421 47.7
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 6.3e-102 375.2 422 47.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 6.3e-102 375.2 420 48.8
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 6.3e-102 375.2 422 46.7
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.1e-101 374.4 420 49.0
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 2.4e-101 373.2 421 48.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 9.1e-101 371.3 422 47.4
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.0e-100 370.2 422 48.3
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 2.7e-100 369.8 420 47.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 5.9e-100 368.6 423 46.1
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 2.2e-99 366.7 422 46.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 5.0e-99 365.5 422 47.6
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 6.5e-99 365.2 422 46.9
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 6.5e-99 365.2 422 46.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 8.5e-99 364.8 422 47.6
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 8.5e-99 364.8 422 46.9
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.5e-98 364.0 422 46.7
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.2e-97 360.9 422 46.4
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.7e-97 359.8 422 46.2
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 8.0e-97 358.2 422 46.7
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.3e-96 356.7 422 44.3
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.7e-94 349.4 422 44.5
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.7e-92 343.2 423 44.4
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-90 337.8 383 48.6
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.5e-90 336.7 423 44.4
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 9.5e-90 334.7 406 45.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.1e-89 333.6 356 49.7
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.6e-89 332.8 414 44.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 4.1e-69 266.2 404 40.3
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 3.5e-68 263.1 217 61.3
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 6.6e-67 258.8 297 46.5
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.2e-60 238.0 376 37.8
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 3.5e-60 236.5 284 44.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.9e-58 230.7 324 41.4
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 4.0e-56 223.0 274 47.4
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-49 200.7 175 57.1
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 4.0e-40 169.9 135 59.3
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 6.9e-40 169.1 248 39.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.2e-39 168.3 160 53.8
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 3.4e-39 166.8 303 34.0
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 6.5e-22 109.4 109 51.4
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-20 104.4 101 51.5
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-20 104.0 87 57.5
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-18 96.7 73 60.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 5.7e-18 96.3 70 61.4
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.8e-17 93.2 70 61.4
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.8e-17 93.2 70 61.4
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-16 91.3 70 60.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.3e-06 58.5 83 44.6


User provided reference genes

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