Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.2e-213 745.0 418 100.0
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.6e-150 534.6 385 69.9
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 2.3e-126 456.4 293 71.7
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 6.6e-126 454.9 295 71.5
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.5e-125 453.0 295 70.2
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.5e-125 453.0 293 71.7
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.3e-125 452.2 295 70.2
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 7.3e-125 451.4 295 69.8
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 3.6e-124 449.1 326 64.1
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 6.2e-124 448.4 295 70.5
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 6.2e-124 448.4 295 70.2
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 8.1e-124 448.0 295 69.8
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.4e-123 447.2 326 64.1
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 3.1e-123 446.0 295 69.2
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 4.0e-123 445.7 295 70.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 5.3e-123 445.3 295 69.5
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 9.0e-123 444.5 295 70.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.2e-122 444.1 295 69.2
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.2e-122 444.1 295 68.5
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.2e-122 444.1 295 69.8
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.4e-122 442.6 295 67.8
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.4e-122 442.6 295 68.8
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 4.5e-122 442.2 295 68.8
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 4.5e-122 442.2 291 69.1
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 4.5e-122 442.2 294 69.0
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 4.5e-122 442.2 294 69.0
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 5.8e-122 441.8 295 69.2
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 5.8e-122 441.8 295 68.8
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 9.9e-122 441.0 360 59.4
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.9e-122 441.0 295 68.8
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 9.9e-122 441.0 292 69.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.3e-121 440.7 295 68.8
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-121 439.9 296 68.9
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.9e-121 439.5 295 69.5
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 4.9e-121 438.7 295 68.5
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 6.4e-121 438.3 295 68.5
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.1e-120 437.6 292 68.5
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.9e-120 436.8 295 67.8
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.9e-120 436.8 295 68.1
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.9e-120 436.8 295 67.1
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.9e-120 436.8 295 69.2
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 7.1e-120 434.9 295 69.2
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 1.6e-119 433.7 295 68.1
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 3.5e-119 432.6 295 70.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 6.0e-119 431.8 293 67.9
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 6.0e-119 431.8 295 68.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.8e-118 430.3 295 68.5
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.8e-118 430.3 295 68.5
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.3e-118 429.9 294 69.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 3.0e-118 429.5 295 65.8
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 3.9e-118 429.1 295 68.1
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 5.1e-118 428.7 295 67.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.1e-117 427.6 295 68.1
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 5.6e-117 425.2 282 67.7
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.8e-116 422.9 288 67.4
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-115 421.0 291 66.0
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-115 421.0 291 66.0
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 3.1e-115 419.5 291 65.3
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 5.3e-115 418.7 291 66.0
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 6.9e-115 418.3 291 65.6
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-114 417.2 291 65.3
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.5e-114 417.2 272 70.2
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.0e-114 416.8 291 63.2
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 4.5e-114 415.6 291 65.3
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 4.5e-114 415.6 291 64.9
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 7.6e-114 414.8 291 64.6
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.7e-113 413.7 291 64.3
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.2e-113 413.3 291 64.9
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.2e-113 413.3 291 64.9
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.9e-113 412.1 291 64.6
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.4e-112 410.6 307 62.5
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.9e-112 410.2 306 62.4
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.4e-112 409.8 291 63.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 4.2e-112 409.1 292 66.8
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.1e-111 406.8 291 64.6
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.0e-111 405.2 274 67.9
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 7.9e-111 404.8 274 67.5
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.0e-110 404.4 274 67.2
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 2.3e-110 403.3 272 68.8
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.3e-110 403.3 292 62.7
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 5.1e-110 402.1 274 67.5
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 6.7e-110 401.7 293 61.8
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.5e-109 400.6 307 61.2
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 4.3e-109 399.1 274 66.4
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 4.3e-109 399.1 292 63.7
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.3e-108 397.5 283 65.7
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 8.2e-108 394.8 342 58.2
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 8.2e-108 394.8 301 62.1
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 4.0e-107 392.5 258 70.5
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 6.9e-107 391.7 295 65.1
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 2.5e-104 383.3 272 64.3
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 5.5e-104 382.1 275 63.6
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 6.0e-103 378.6 275 65.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 2.8e-100 369.8 292 59.6
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 5.3e-99 365.5 295 59.3
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 6.9e-99 365.2 277 62.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.5e-98 364.0 295 58.3
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.5e-98 364.0 303 59.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 5.9e-98 362.1 238 70.6
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-97 360.5 292 57.9
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.7e-97 360.5 295 60.3
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 2.9e-97 359.8 243 68.7
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.9e-97 359.8 295 58.0
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 3.8e-97 359.4 245 68.6
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.4e-96 357.5 204 83.8
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 4.2e-96 355.9 261 65.5
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.2e-95 354.4 295 59.3
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.7e-95 353.2 239 66.9
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.7e-95 353.2 239 66.9
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.7e-95 353.2 239 66.9
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 9.7e-93 344.7 331 53.2
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.2e-92 343.6 292 56.5
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.8e-91 340.5 305 55.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 4.1e-91 339.3 236 66.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-88 330.9 295 55.6
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.9e-88 330.5 295 56.3
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.2e-87 327.8 247 61.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.1e-87 327.0 293 55.3
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 6.3e-84 315.5 215 69.3
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 2.6e-82 310.1 264 56.8
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 4.5e-82 309.3 215 68.4
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 5.9e-82 308.9 256 58.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 7.7e-82 308.5 219 65.3
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 5.5e-80 302.4 282 52.5
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 3.9e-78 296.2 300 48.7
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 8.2e-76 288.5 215 64.7
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 5.9e-74 282.3 158 77.2
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 5.0e-73 279.3 194 64.9
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.5e-72 277.7 300 51.0
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.2e-71 274.6 158 76.6
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 4.0e-70 269.6 255 53.3
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 6.7e-70 268.9 161 75.2
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.2e-65 253.8 217 55.8
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 2.1e-63 247.3 281 43.8
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.7e-63 246.9 244 51.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.5e-61 241.1 180 61.7
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.8e-59 234.2 284 43.3
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.5e-58 229.9 161 65.8
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-57 228.0 291 43.0
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.7e-57 227.6 138 69.6
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.5e-57 225.7 160 65.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.9e-56 224.2 295 43.4
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 9.5e-56 221.9 140 73.6
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.8e-55 220.3 242 46.3
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 2.3e-54 217.2 137 72.3
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.5e-53 212.2 138 65.2
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 6.3e-52 209.1 175 55.4
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.6e-50 204.5 157 59.9
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 4.3e-48 196.4 174 55.2
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.2e-47 194.9 144 63.2
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 8.0e-47 192.2 147 59.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.2e-42 178.3 111 73.0
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 3.5e-42 176.8 111 72.1
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.0e-42 176.0 111 73.9
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.7e-41 174.5 111 71.2
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.5e-37 161.4 150 56.0
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.6e-37 160.6 277 37.2
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 7.5e-37 159.1 195 47.7
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.7e-36 157.9 110 68.2
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 8.6e-33 145.6 175 46.3
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-32 144.8 144 48.6
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 7.5e-29 132.5 81 70.4
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 6.0e-26 122.9 81 63.0
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.0e-25 122.1 84 70.2
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-25 121.7 81 66.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 9.9e-21 105.5 109 47.7
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 3.8e-20 103.6 94 55.3
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 6.0e-18 96.3 52 78.8
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.3e-17 95.1 61 73.8
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.8e-13 79.7 60 63.3
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.2e-12 77.8 46 69.6
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.9e-11 74.7 45 71.1
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 7.8e-10 69.3 41 70.7
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.0e-09 68.9 48 58.3
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.3e-09 68.6 47 63.8
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.3e-08 63.9 62 48.4
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 4.3e-08 63.5 48 58.3
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.3e-08 62.8 35 71.4
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 8.1e-07 59.3 32 75.0
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.4e-06 58.5 35 68.6


User provided reference genes

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