Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 2.9e-249 864.8 441 100.0
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 1.4e-195 686.4 439 80.2
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 8.2e-151 537.7 387 68.0
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 7.0e-150 534.6 387 67.7
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.2e-149 533.9 386 68.7
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 3.5e-149 532.3 386 68.4
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 4.5e-149 531.9 387 66.4
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 4.5e-149 531.9 424 63.7
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 5.9e-149 531.6 387 67.2
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.7e-148 530.0 362 70.7
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.7e-148 530.0 389 66.6
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 2.2e-148 529.6 396 66.7
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 2.9e-148 529.3 388 67.3
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 5.0e-148 528.5 386 67.9
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 3.2e-147 525.8 400 66.2
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 4.2e-147 525.4 387 66.4
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 7.2e-147 524.6 433 63.0
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 4.7e-146 521.9 396 65.2
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 6.1e-146 521.5 434 61.5
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 6.1e-146 521.5 428 61.9
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 8.0e-146 521.2 439 61.0
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 8.0e-146 521.2 396 65.4
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 1.4e-145 520.4 396 64.4
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 3.9e-145 518.8 393 66.7
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 3.9e-145 518.8 387 66.7
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 6.7e-145 518.1 396 65.7
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 6.7e-145 518.1 388 65.7
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 6.7e-145 518.1 396 64.9
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 6.7e-145 518.1 395 66.6
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 8.8e-145 517.7 382 66.8
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 8.8e-145 517.7 393 66.4
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 1.1e-144 517.3 388 66.8
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.1e-144 517.3 383 66.6
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.5e-144 516.9 388 65.7
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 4.4e-144 515.4 361 69.5
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 4.4e-144 515.4 388 66.2
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 5.7e-144 515.0 392 65.6
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 5.7e-144 515.0 384 66.9
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 5.7e-144 515.0 395 64.8
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 9.7e-144 514.2 383 66.1
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 1.3e-143 513.8 390 64.9
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 2.2e-143 513.1 429 60.8
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 2.8e-143 512.7 367 68.4
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 2.8e-143 512.7 394 64.2
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 3.7e-143 512.3 440 60.2
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 3.7e-143 512.3 394 63.7
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 4.8e-143 511.9 394 61.9
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 6.3e-143 511.5 444 59.0
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 1.1e-142 510.8 437 59.7
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.4e-142 510.4 395 64.8
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 1.8e-142 510.0 398 64.1
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 3.1e-142 509.2 388 64.7
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 5.3e-142 508.4 397 64.2
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 7.0e-142 508.1 397 64.5
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.2e-141 507.3 388 65.2
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.0e-141 506.5 361 68.4
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.6e-141 506.1 391 64.7
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 2.6e-141 506.1 419 61.1
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 5.9e-141 505.0 389 64.5
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.9e-141 505.0 391 64.5
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 5.9e-141 505.0 388 64.7
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 5.9e-141 505.0 379 65.7
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 7.7e-141 504.6 406 62.8
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.0e-140 504.2 397 64.5
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 2.2e-140 503.1 390 63.6
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 2.2e-140 503.1 429 61.3
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 2.2e-140 503.1 388 61.9
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 2.9e-140 502.7 390 64.1
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 2.9e-140 502.7 399 64.4
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 3.8e-140 502.3 398 63.3
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 8.5e-140 501.1 379 63.1
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 1.1e-139 500.7 389 63.5
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 3.2e-139 499.2 389 64.0
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 3.2e-139 499.2 388 61.9
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 3.2e-139 499.2 389 63.2
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 7.2e-139 498.0 439 59.0
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 7.2e-139 498.0 389 63.0
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 9.4e-139 497.7 445 59.6
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 1.2e-138 497.3 389 62.5
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 1.2e-138 497.3 378 64.6
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 6.1e-138 495.0 389 62.7
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 1.0e-137 494.2 389 63.0
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.0e-137 492.7 389 62.5
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.0e-137 492.7 389 62.5
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 6.8e-137 491.5 389 62.2
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 6.8e-137 491.5 389 62.2
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 1.2e-136 490.7 387 62.8
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.5e-136 490.3 445 59.1
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 2.6e-136 489.6 393 62.8
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 2.6e-136 489.6 388 61.3
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 9.7e-136 487.6 412 58.3
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.2e-135 486.5 444 57.7
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 6.3e-135 485.0 387 63.0
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.8e-134 483.4 380 61.8
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.2e-133 480.7 447 58.8
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 5.5e-131 471.9 381 61.4
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 7.2e-131 471.5 390 62.6
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 3.6e-130 469.2 398 60.3
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 8.3e-127 458.0 439 54.2
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 2.6e-120 436.4 445 52.8
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 5.0e-116 422.2 302 68.2
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 7.3e-115 418.3 332 64.2
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 4.3e-107 392.5 379 56.7
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 1.1e-99 367.9 348 56.3
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.6e-98 364.0 380 50.8
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.6e-98 364.0 380 49.2
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 5.8e-96 355.5 363 49.9
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 1.7e-95 354.0 398 46.0
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 3.0e-92 343.2 434 47.7
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 5.8e-88 328.9 248 66.9
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.7e-84 317.4 372 44.6
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 9.0e-73 278.5 393 41.7
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.1e-70 271.6 343 43.4
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.4e-70 270.4 325 43.4
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.2e-48 198.4 137 66.4
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 2.0e-32 144.4 256 38.3
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 3.5e-32 143.7 109 65.1
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 5.9e-32 142.9 94 68.1
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 1.3e-23 115.2 85 70.6
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 6.5e-23 112.8 260 30.8
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 8.5e-23 112.5 268 31.0
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.9e-22 111.3 83 66.3
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.6e-21 108.2 83 66.3
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 5.7e-19 99.8 85 62.4
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 4.8e-18 96.7 354 26.8
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 7.0e-17 92.8 72 65.3
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 2.6e-11 74.3 65 55.4
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.2e-10 71.2 71 52.1
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 7.0e-09 66.2 124 34.7
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.2e-09 65.9 71 50.7


User provided reference genes

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