Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 3.0e-31 138.3 92 100.0
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 2.3e-23 112.1 95 76.8
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 1.0e-18 96.7 89 60.7
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 1.9e-17 92.4 89 58.4
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 7.2e-17 90.5 89 57.3
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 9.5e-17 90.1 88 55.7
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 1.6e-16 89.4 91 57.1
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 1.6e-16 89.4 91 57.1
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 2.1e-16 89.0 89 56.2
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 2.1e-16 89.0 89 56.2
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 2.1e-16 89.0 89 55.1
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 3.6e-16 88.2 92 57.6
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 4.7e-16 87.8 89 56.2
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 4.7e-16 87.8 90 55.6
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 6.1e-16 87.4 90 55.6
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 8.0e-16 87.0 89 55.1
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.0e-15 86.7 89 55.1
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 1.0e-15 86.7 90 55.6
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 1.0e-15 86.7 88 54.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.4e-15 86.3 88 54.5
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 1.8e-15 85.9 88 54.5
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 2.3e-15 85.5 91 54.9
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 2.3e-15 85.5 90 58.9
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 2.3e-15 85.5 91 54.9
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 4.0e-15 84.7 88 52.3
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 4.0e-15 84.7 89 53.9
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 4.0e-15 84.7 89 53.9
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 5.2e-15 84.3 89 53.9
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 6.8e-15 84.0 89 52.8
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 6.8e-15 84.0 89 52.8
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 6.8e-15 84.0 89 55.1
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 8.8e-15 83.6 90 54.4
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 8.8e-15 83.6 89 55.1
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 8.8e-15 83.6 89 55.1
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 8.8e-15 83.6 90 54.4
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 1.2e-14 83.2 89 53.9
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 1.2e-14 83.2 89 53.9
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 1.2e-14 83.2 89 53.9
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 1.5e-14 82.8 91 52.7
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 1.5e-14 82.8 88 53.4
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 1.5e-14 82.8 89 51.7
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 2.6e-14 82.0 89 53.9
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 2.6e-14 82.0 89 53.9
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 2.6e-14 82.0 89 53.9
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 2.6e-14 82.0 92 54.3
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 3.4e-14 81.6 89 53.9
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 3.4e-14 81.6 89 53.9
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 4.4e-14 81.3 89 52.8
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 4.4e-14 81.3 89 52.8
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 4.4e-14 81.3 88 53.4
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 5.7e-14 80.9 88 51.1
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 5.7e-14 80.9 84 53.6
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 7.5e-14 80.5 90 51.1
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 7.5e-14 80.5 89 51.7
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 9.8e-14 80.1 100 50.0
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 9.8e-14 80.1 89 50.6
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 9.8e-14 80.1 89 50.6
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 9.8e-14 80.1 93 52.7
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 1.3e-13 79.7 88 50.0
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 2.2e-13 79.0 89 51.7
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 2.2e-13 79.0 89 51.7
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 2.2e-13 79.0 97 49.5
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 2.2e-13 79.0 89 49.4
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 8.3e-13 77.0 89 51.7
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 1.1e-12 76.6 88 50.0
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 1.4e-12 76.3 90 53.3
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 1.8e-12 75.9 91 49.5
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 2.4e-12 75.5 88 50.0
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 3.5e-11 71.6 88 47.7
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 5.9e-11 70.9 93 49.5
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 7.8e-11 70.5 90 50.0
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 7.8e-11 70.5 90 50.0
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 1.0e-10 70.1 89 48.3
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 1.0e-10 70.1 89 49.4
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 1.7e-10 69.3 100 46.0
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.3e-10 68.9 90 48.9
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.9e-10 68.6 90 48.9
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 5.0e-10 67.8 74 52.7
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.6e-10 67.4 90 47.8
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.6e-10 67.4 90 47.8
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 6.6e-10 67.4 84 50.0
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 8.6e-10 67.0 88 47.7
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 8.6e-10 67.0 90 48.9
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.1e-09 66.6 90 47.8
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 1.5e-09 66.2 89 46.1
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.3e-09 65.1 90 46.7
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.3e-09 65.1 90 46.7
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 5.6e-09 64.3 90 46.7
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 9.5e-09 63.5 99 41.4
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 9.5e-09 63.5 91 44.0
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 1.6e-08 62.8 99 41.4
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 2.1e-08 62.4 49 63.3
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 2.1e-08 62.4 86 45.3
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 8.0e-08 60.5 82 47.6
Mapoly0106s0030 Marchantia polymorpha HOM05D007547 ORTHO05D009590 8.9e-07 57.0 93 41.9
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 8.9e-07 57.0 92 40.2
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 8.9e-07 57.0 92 40.2
SMO145G0072 Selaginella moellendorffii HOM05D007547 ORTHO05D009590 2.6e-06 55.5 90 42.2


User provided reference genes

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