Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0376200 Oryza sativa ssp. japonica HOM05D002179 ORTHO05D002232 1.0e-55 219.9 119 100.0
CAN.G168.4 Capsicum annuum HOM05D002179 ORTHO05D002232 2.0e-11 72.8 96 44.8
Sed0016484 Sechium edule HOM05D002179 ORTHO05D002232 2.0e-11 72.8 90 50.0
FAN16G2656 Fragaria x ananassa HOM05D002179 ORTHO05D002232 3.4e-11 72.0 79 53.2
FvH4_3g08140 Fragaria vesca HOM05D002179 ORTHO05D002232 4.5e-11 71.6 80 52.5
Gohir.A10G030300 Gossypium hirsutum HOM05D002179 ORTHO05D002232 4.5e-11 71.6 71 53.5
Gohir.D10G031200 Gossypium hirsutum HOM05D002179 ORTHO05D002232 4.5e-11 71.6 71 53.5
Gorai.011G032800 Gossypium raimondii HOM05D002179 ORTHO05D002232 4.5e-11 71.6 71 53.5
Os08g0375900 Oryza sativa ssp. japonica HOM05D002179 ORTHO05D002232 5.9e-11 71.2 78 53.8
Oeu048418.1 Olea europaea HOM05D002179 ORTHO05D002232 5.0e-10 68.2 95 44.2
Sabra04G0034700 Salix brachista HOM05D002179 ORTHO05D002232 5.0e-10 68.2 71 54.9
TAR626G1459 Trochodendron aralioides HOM05D002179 ORTHO05D002232 5.0e-10 68.2 94 45.7
Cfa000572 Carpinus fangiana HOM05D002179 ORTHO05D002232 6.5e-10 67.8 90 48.9
CsaV3_6G050660 Cucumis sativus L. HOM05D002179 ORTHO05D002232 6.5e-10 67.8 90 47.8
MD10G1284300 Malus domestica HOM05D002179 ORTHO05D002232 6.5e-10 67.8 92 45.7
Atru.chr10.1731 Acer truncatum HOM05D002179 ORTHO05D002232 8.5e-10 67.4 98 42.9
Sp1g24920 Schrenkiella parvula HOM05D002179 ORTHO05D002232 8.5e-10 67.4 95 44.2
unitig_699.g19341 Utricularia gibba HOM05D000301 ORTHO05D000303 8.5e-10 67.4 97 44.3
Thhalv10008389m.g Eutrema salsugineum HOM05D002179 ORTHO05D002232 1.1e-09 67.0 95 44.2
MD05G1305000 Malus domestica HOM05D002179 ORTHO05D002232 1.1e-09 67.0 92 46.7
Nitab4.5_0010549g0010 Nicotiana tabacum HOM05D002179 ORTHO05D002232 1.1e-09 67.0 100 42.0
Potri.004G053300 Populus trichocarpa HOM05D002179 ORTHO05D002232 1.4e-09 66.6 71 53.5
RcHm_v2.0_Chr5g0010041 Rosa chinensis HOM05D002179 ORTHO05D002232 1.4e-09 66.6 92 44.6
Cpa.g.sc7.18 Carica papaya HOM05D002179 ORTHO05D002232 1.9e-09 66.2 93 44.1
ClCG01G023520 Citrullus lanatus HOM05D002179 ORTHO05D002232 1.9e-09 66.2 90 47.8
Ciclev10016225m.g Citrus clementina HOM05D002179 ORTHO05D002232 1.9e-09 66.2 101 40.6
Gohir.A06G200800 Gossypium hirsutum HOM05D002179 ORTHO05D002232 1.9e-09 66.2 75 52.0
Gohir.D06G208100 Gossypium hirsutum HOM05D002179 ORTHO05D002232 1.9e-09 66.2 73 53.4
Gorai.010G242500 Gossypium raimondii HOM05D002179 ORTHO05D002232 1.9e-09 66.2 73 53.4
PGR042G1158 Punica granatum HOM05D002179 ORTHO05D002232 1.9e-09 66.2 91 46.2
CSS0005037 Camellia sinensis var. sinensis HOM05D002179 ORTHO05D002232 2.5e-09 65.9 95 44.2
Dinv40647 Davidia involucrata HOM05D002179 ORTHO05D002232 2.5e-09 65.9 91 45.1
Lalb_Chr05g0218711 Lupinus albus HOM05D002179 ORTHO05D002232 2.5e-09 65.9 98 40.8
vmacro03883 Vaccinium macrocarpon HOM05D002179 ORTHO05D002232 2.5e-09 65.9 99 43.4
Lj1C1196T10 Lonicera japonica HOM05D002179 ORTHO05D002232 3.2e-09 65.5 92 45.7
Nn1g04337 Nelumbo nucifera HOM05D002179 ORTHO05D002232 3.2e-09 65.5 93 47.3
Oeu045069.1 Olea europaea HOM05D002179 ORTHO05D002232 3.2e-09 65.5 93 43.0
Dinv04638 Davidia involucrata HOM05D002179 ORTHO05D002232 4.2e-09 65.1 96 43.8
Dinv17391 Davidia involucrata HOM05D002179 ORTHO05D002232 4.2e-09 65.1 96 43.8
Lsat_1_v5_gn_1_120740 Lactuca sativa HOM05D002179 ORTHO05D002232 4.2e-09 65.1 87 46.0
Prupe.4G057200 Prunus persica HOM05D002179 ORTHO05D002232 5.5e-09 64.7 92 45.7
GSVIVG01021168001 Vitis vinifera HOM05D002179 ORTHO05D002232 5.5e-09 64.7 92 44.6
CiPaw.09G067100 Carya illinoinensis HOM05D002179 ORTHO05D002232 7.2e-09 64.3 92 45.7
Ca_26046_v3 Cicer arietinum L. HOM05D002179 ORTHO05D002232 7.2e-09 64.3 89 44.9
DCAR_005238 Daucus carota HOM05D002179 ORTHO05D002232 9.4e-09 63.9 90 45.6
CANSAT35G0814 Cannabis sativa HOM05D002179 ORTHO05D002232 1.6e-08 63.2 96 41.7
Ciclev10016428m.g Citrus clementina HOM05D002179 ORTHO05D002232 1.6e-08 63.2 79 49.4
MELO3C007234.2 Cucumis melo HOM05D002179 ORTHO05D002232 1.6e-08 63.2 41 78.0
Medtr4g087905 Medicago truncatula HOM05D002179 ORTHO05D002232 1.6e-08 63.2 101 40.6
Peaxi162Scf00269g00059 Petunia axillaris HOM05D002179 ORTHO05D002232 1.6e-08 63.2 95 42.1
Sp4g16330 Schrenkiella parvula HOM05D002179 ORTHO05D002232 1.6e-08 63.2 77 50.6
CSS0036133 Camellia sinensis var. sinensis HOM05D002179 ORTHO05D002232 2.1e-08 62.8 96 40.6
Ciclev10016324m.g Citrus clementina HOM05D002179 ORTHO05D002232 2.1e-08 62.8 97 40.2
Sc05g0007240 Simmondsia chinensis HOM05D002179 ORTHO05D002232 2.1e-08 62.8 95 44.2
Actinidia07628 Actinidia chinensis HOM05D002179 ORTHO05D002232 2.7e-08 62.4 42 76.2
Carub.0004s1562 Capsella rubella HOM05D002179 ORTHO05D002232 2.7e-08 62.4 88 45.5
CiPaw.10G056700 Carya illinoinensis HOM05D002179 ORTHO05D002232 2.7e-08 62.4 92 43.5
AUR62036541 Chenopodium quinoa HOM05D002179 ORTHO05D002232 2.7e-08 62.4 88 46.6
Solyc10g008770.3 Solanum lycopersicum HOM05D002179 ORTHO05D002232 2.7e-08 62.4 41 78.0
Sopen10g004540 Solanum pennellii HOM05D002179 ORTHO05D002232 2.7e-08 62.4 41 78.0
PGSC0003DMG401026622 Solanum tuberosum HOM05D002179 ORTHO05D002232 2.7e-08 62.4 41 78.0
BcaNung06435 Brassica carinata HOM05D002179 ORTHO05D002232 3.6e-08 62.0 96 40.6
Glyma.07G204200 Glycine max HOM05D002179 ORTHO05D002232 3.6e-08 62.0 41 75.6
Glyma.13G171900 Glycine max HOM05D002179 ORTHO05D002232 3.6e-08 62.0 41 75.6
Phvul.003G057301 Phaseolus vulgaris HOM05D002179 ORTHO05D002232 3.6e-08 62.0 41 75.6
VMungo0251G3328 Vigna mungo HOM05D002179 ORTHO05D002232 3.6e-08 62.0 41 75.6
A08p25350 Brassica napus HOM05D002179 ORTHO05D002232 4.7e-08 61.6 90 43.3
BraA08t34487Z Brassica rapa HOM05D002179 ORTHO05D002232 4.7e-08 61.6 90 43.3
Cc02_g14420 Coffea canephora HOM05D002179 ORTHO05D002232 4.7e-08 61.6 97 42.3
HanXRQChr08g0213991 Helianthus annuus HOM05D002179 ORTHO05D002232 4.7e-08 61.6 75 46.7
Actinidia05674 Actinidia chinensis HOM05D002179 ORTHO05D002232 6.1e-08 61.2 97 42.3
Aa31LG6G11100 Aethionema arabicum HOM05D002179 ORTHO05D002232 6.1e-08 61.2 95 41.1
AT2G33980 Arabidopsis thaliana HOM05D002179 ORTHO05D002232 6.1e-08 61.2 41 73.2
arahy.Tifrunner.gnm1.ann1.3RY0PX Arachis hypogaea HOM05D002179 ORTHO05D002232 6.1e-08 61.2 94 41.5
AUR62036542 Chenopodium quinoa HOM05D002179 ORTHO05D002232 6.1e-08 61.2 41 78.0
Lj4g0025931 Lotus japonicus HOM05D002179 ORTHO05D002232 6.1e-08 61.2 91 46.2
SGA_v2.0_scaffold1G00003 Striga asiatica HOM05D002179 ORTHO05D002232 6.1e-08 61.2 41 75.6
Ah.09g237840 Amaranthus hybridus HOM05D002179 ORTHO05D002232 7.9e-08 60.8 87 47.1
AT1G28960 Arabidopsis thaliana HOM05D002179 ORTHO05D002232 7.9e-08 60.8 41 73.2
EL10Ac8g20485 Beta vulgaris HOM05D002179 ORTHO05D002232 7.9e-08 60.8 100 40.0
AUR62031137 Chenopodium quinoa HOM05D002179 ORTHO05D002232 7.9e-08 60.8 41 78.0
Gohir.A06G130200 Gossypium hirsutum HOM05D002179 ORTHO05D002232 7.9e-08 60.8 90 42.2
HanXRQChr01g0004921 Helianthus annuus HOM05D002179 ORTHO05D002232 7.9e-08 60.8 75 45.3
Nn1g09013 Nelumbo nucifera HOM05D002179 ORTHO05D002232 7.9e-08 60.8 93 43.0
Potri.011G063300 Populus trichocarpa HOM05D002179 ORTHO05D002232 7.9e-08 60.8 91 45.1
Hund23956 Selenicereus undatus HOM05D002179 ORTHO05D002232 7.9e-08 60.8 98 41.8
MSTRG.16138 Avicennia marina HOM05D002179 ORTHO05D002232 1.0e-07 60.5 41 73.2
HanXRQChr01g0004941 Helianthus annuus HOM05D002179 ORTHO05D002232 1.0e-07 60.5 75 45.3
vmacro20308 Vaccinium macrocarpon HOM05D002179 ORTHO05D002232 1.0e-07 60.5 86 44.2
AL1G42580 Arabidopsis lyrata HOM05D002179 ORTHO05D002232 1.4e-07 60.1 41 70.7
Migut.H01456 Erythranthe guttata HOM05D002179 ORTHO05D002232 1.4e-07 60.1 75 48.0
Eucgr.D00552 Eucalyptus grandis HOM05D002179 ORTHO05D002232 1.4e-07 60.1 93 44.1
Eucgr.E02668 Eucalyptus grandis HOM05D002179 ORTHO05D002232 1.4e-07 60.1 41 73.2
CARHR128050 Cardamine hirsuta HOM05D002179 ORTHO05D002232 1.8e-07 59.7 81 45.7
Psat7g118720 Pisum sativum HOM05D002179 ORTHO05D002232 1.8e-07 59.7 90 41.1
TPR.G16263 Trifolium pratense HOM05D002179 ORTHO05D002232 1.8e-07 59.7 94 41.5
Duzib160G0452 Durio zibethinus HOM05D002179 ORTHO05D002232 2.3e-07 59.3 91 40.7
Duzib235G0757 Durio zibethinus HOM05D002179 ORTHO05D002232 2.3e-07 59.3 91 42.9
BcaB02g10605 Brassica carinata HOM05D002179 ORTHO05D002232 3.0e-07 58.9 71 47.9
BcaNung06753 Brassica carinata HOM05D002179 ORTHO05D002232 3.0e-07 58.9 41 70.7
C03p75490 Brassica napus HOM05D002179 ORTHO05D002232 3.0e-07 58.9 41 70.7
BolC3t19805H Brassica oleracea HOM05D002179 ORTHO05D002232 3.0e-07 58.9 41 70.7
CARHR028170 Cardamine hirsuta HOM05D002179 ORTHO05D002232 3.0e-07 58.9 41 68.3
Gorai.010G156400 Gossypium raimondii HOM05D002179 ORTHO05D002232 3.0e-07 58.9 90 42.2
COL.COLO4_31351 Corchorus olitorius HOM05D002179 ORTHO05D002232 3.9e-07 58.5 41 73.2
Thecc.06G176000 Theobroma cacao HOM05D002179 ORTHO05D002232 3.9e-07 58.5 41 73.2
TWI38G0257 Tripterygium wilfordii HOM05D002179 ORTHO05D002232 3.9e-07 58.5 41 73.2
Potri.004G053200 Populus trichocarpa HOM05D002179 ORTHO05D002232 5.1e-07 58.2 71 47.9
Actinidia05675 Actinidia chinensis HOM05D002179 ORTHO05D002232 6.7e-07 57.8 40 72.5
Hma1.2p1_0155F.1_g068440 Hydrangea macrophylla HOM05D002179 ORTHO05D002232 6.7e-07 57.8 41 70.7
BolC4t23086H Brassica oleracea HOM05D002179 ORTHO05D002232 8.8e-07 57.4 71 49.3
Migut.M01069 Erythranthe guttata HOM05D002179 ORTHO05D002232 8.8e-07 57.4 41 73.2
Gohir.D06G134500 Gossypium hirsutum HOM05D002179 ORTHO05D002232 8.8e-07 57.4 90 41.1
Manes.17G053000 Manihot esculenta HOM05D002179 ORTHO05D002232 8.8e-07 57.4 90 43.3
A05p11650 Brassica napus HOM05D002179 ORTHO05D002232 1.1e-06 57.0 71 47.9
C04p15120 Brassica napus HOM05D002179 ORTHO05D002232 1.1e-06 57.0 71 49.3
BraA05t20112Z Brassica rapa HOM05D002179 ORTHO05D002232 1.1e-06 57.0 71 47.9
CANSAT21G1701 Cannabis sativa HOM05D002179 ORTHO05D002232 1.1e-06 57.0 41 70.7
CANSAT35G1987 Cannabis sativa HOM05D002179 ORTHO05D002232 1.1e-06 57.0 39 74.4
Carub.0001s2717 Capsella rubella HOM05D002179 ORTHO05D002232 1.1e-06 57.0 41 70.7
Thecc.06G175900 Theobroma cacao HOM05D002179 ORTHO05D002232 1.1e-06 57.0 87 42.5
VMungo0540G0626 Vigna mungo HOM05D002179 ORTHO05D002232 1.1e-06 57.0 86 43.0
CSS0041682 Camellia sinensis var. sinensis HOM05D002179 ORTHO05D002232 1.5e-06 56.6 90 42.2
CDE02G2750 Ceratophyllum demersum HOM05D002179 ORTHO05D002232 1.5e-06 56.6 91 44.0
HPP92_021320 Vanilla planifolia HOM05D002179 ORTHO05D002232 1.5e-06 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.4CF6XM Arachis hypogaea HOM05D002179 ORTHO05D002232 2.0e-06 56.2 90 42.2
Cc02_g14430 Coffea canephora HOM05D002179 ORTHO05D002232 2.0e-06 56.2 79 44.3
Haze_06278 Corylus avellana HOM05D002179 ORTHO05D002232 2.0e-06 56.2 76 44.7
Glyma.13G232633 Glycine max HOM05D002179 ORTHO05D002232 2.0e-06 56.2 89 42.7
Gohir.A06G200900 Gossypium hirsutum HOM05D002179 ORTHO05D002232 2.0e-06 56.2 41 68.3
Gohir.D06G208000 Gossypium hirsutum HOM05D002179 ORTHO05D002232 2.0e-06 56.2 41 68.3
Gorai.010G242600 Gossypium raimondii HOM05D002179 ORTHO05D002232 2.0e-06 56.2 41 68.3
Phvul.006G178500 Phaseolus vulgaris HOM05D002179 ORTHO05D002232 2.0e-06 56.2 36 80.6
Hund21189 Selenicereus undatus HOM05D002179 ORTHO05D002232 2.0e-06 56.2 79 46.8
THA.LOC104806146 Tarenaya hassleriana HOM05D002179 ORTHO05D002232 2.0e-06 56.2 84 45.2
Sabra04G0034500 Salix brachista HOM05D002179 ORTHO05D002232 2.6e-06 55.8 41 68.3
SGA_v2.0_scaffold16G07663 Striga asiatica HOM05D002179 ORTHO05D002232 2.6e-06 55.8 40 72.5
Thhalv10016959m.g Eutrema salsugineum HOM05D002179 ORTHO05D002232 3.3e-06 55.5 84 44.0
MBI07_g17042_MAGBIO Magnolia biondii HOM05D002179 ORTHO05D002232 3.3e-06 55.5 41 68.3
Actinidia11563 Actinidia chinensis HOM05D002179 ORTHO05D002232 4.4e-06 55.1 82 41.5
EL10Ac8g20484 Beta vulgaris HOM05D002179 ORTHO05D002232 4.4e-06 55.1 38 73.7
Carub.0008s0198 Capsella rubella HOM05D002179 ORTHO05D002232 4.4e-06 55.1 80 41.2
Duzib192G0681 Durio zibethinus HOM05D002179 ORTHO05D002232 4.4e-06 55.1 89 41.6
Aqoxy4G00490 Aquilegia oxysepala HOM05D002179 ORTHO05D002232 5.7e-06 54.7 78 44.9
Glyma.15G080067 Glycine max HOM05D002179 ORTHO05D002232 5.7e-06 54.7 89 41.6
VMungo0540G2053 Vigna mungo HOM05D002179 ORTHO05D002232 5.7e-06 54.7 35 80.0
ATR0602G175 Amborella trichopoda HOM05D002179 ORTHO05D002232 7.4e-06 54.3 73 46.6
Dinv17392 Davidia involucrata HOM05D002179 ORTHO05D002232 7.4e-06 54.3 41 68.3
Ca_00415_v3 Cicer arietinum L. HOM05D002179 ORTHO05D002232 9.7e-06 53.9 38 73.7
Dinv00807 Davidia involucrata HOM05D002179 ORTHO05D002232 9.7e-06 53.9 84 42.9
Dinv08448 Davidia involucrata HOM05D002179 ORTHO05D002232 9.7e-06 53.9 84 42.9
Glyma.13G232567 Glycine max HOM05D002179 ORTHO05D002232 9.7e-06 53.9 42 64.3
Lj3A948G65 Lonicera japonica HOM05D002179 ORTHO05D002232 9.7e-06 53.9 96 39.6
Potri.004G053100 Populus trichocarpa HOM05D002179 ORTHO05D002232 9.7e-06 53.9 40 70.0


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