Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.8e-125 452.6 234 100.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.0e-88 328.6 174 94.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 4.3e-66 255.4 234 62.0
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.8e-43 180.3 173 55.5
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 8.8e-43 177.9 175 56.0
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.5e-42 177.2 180 53.3
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.6e-42 176.4 193 51.8
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.6e-42 176.4 209 47.8
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 3.3e-42 176.0 175 52.0
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.3e-42 176.0 176 55.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 4.4e-42 175.6 154 58.4
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.4e-42 174.9 169 55.6
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 7.4e-42 174.9 162 57.4
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 7.4e-42 174.9 162 57.4
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 7.4e-42 174.9 162 57.4
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 9.7e-42 174.5 166 55.4
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 9.7e-42 174.5 172 54.1
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.3e-41 174.1 153 60.8
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.3e-41 174.1 156 59.6
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.7e-41 173.7 157 59.2
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 4.8e-41 172.2 177 52.0
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 4.8e-41 172.2 164 53.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 6.3e-41 171.8 179 52.0
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.8e-40 170.2 161 56.5
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.8e-40 170.2 199 50.3
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.4e-40 169.9 172 51.7
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 3.1e-40 169.5 197 48.7
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 4.1e-40 169.1 195 50.8
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.2e-39 167.5 167 53.3
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.2e-39 167.5 197 48.2
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.5e-39 167.2 193 48.7
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.5e-39 167.2 154 57.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.5e-39 167.2 176 52.8
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.0e-39 166.8 155 56.8
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.0e-39 166.8 173 52.6
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.0e-39 166.8 193 48.7
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 2.6e-39 166.4 154 57.1
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 2.6e-39 166.4 177 51.4
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 3.4e-39 166.0 173 52.0
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 7.7e-39 164.9 173 52.6
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 7.7e-39 164.9 176 50.6
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.0e-38 164.5 192 49.5
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.0e-38 164.5 176 50.6
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.0e-38 164.5 181 52.5
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.3e-38 164.1 160 53.8
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.7e-38 163.7 177 52.0
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.7e-38 163.7 181 48.6
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.7e-38 163.7 183 49.7
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.2e-38 163.3 176 48.9
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 3.8e-38 162.5 180 47.8
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 5.0e-38 162.2 177 50.3
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 8.5e-38 161.4 159 54.7
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 8.5e-38 161.4 178 52.2
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 8.5e-38 161.4 154 55.8
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.1e-37 161.0 176 51.1
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.4e-37 160.6 173 50.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 3.2e-37 159.5 191 46.6
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 4.2e-37 159.1 170 48.2
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 5.5e-37 158.7 154 52.6
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.2e-36 157.5 173 50.9
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.6e-36 157.1 176 47.2
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.1e-36 156.8 152 52.6
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.6e-36 156.0 176 47.2
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 4.7e-36 155.6 175 48.6
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 6.1e-36 155.2 158 53.2
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.4e-35 154.1 159 51.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.8e-35 153.7 198 47.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.9e-35 152.5 170 48.2
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 5.2e-35 152.1 169 47.3
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.2e-35 152.1 131 63.4
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 8.8e-35 151.4 175 49.1
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.8e-35 151.4 180 45.6
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 8.8e-35 151.4 177 51.4
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.5e-34 150.6 139 53.2
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.0e-34 150.2 176 45.5
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 2.6e-34 149.8 148 52.7
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 3.3e-34 149.4 158 51.3
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 4.4e-34 149.1 156 53.2
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.4e-34 149.1 158 51.9
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 5.7e-34 148.7 173 48.6
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 7.4e-34 148.3 171 46.2
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 7.4e-34 148.3 144 55.6
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 7.4e-34 148.3 176 46.0
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 7.4e-34 148.3 181 45.9
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 9.7e-34 147.9 161 50.3
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.3e-33 147.5 150 52.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.2e-33 146.7 155 52.9
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.8e-33 145.6 157 50.3
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 6.3e-33 145.2 175 48.6
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 8.2e-33 144.8 176 46.6
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.1e-32 144.4 184 44.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.1e-32 142.9 158 49.4
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.0e-32 141.7 153 51.6
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.0e-31 140.2 152 50.7
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 4.5e-31 139.0 147 52.4
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.3e-30 137.5 183 44.8
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 6.5e-30 135.2 146 50.7
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 2.5e-29 133.3 256 34.4
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.2e-29 132.5 138 55.8
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 4.7e-28 129.0 127 56.7
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 3.0e-27 126.3 133 51.1
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 7.5e-26 121.7 133 50.4
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 9.7e-26 121.3 110 60.0
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.7e-25 120.6 141 47.5
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.8e-25 119.0 189 41.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 8.2e-25 118.2 135 49.6
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 1.1e-24 117.9 153 45.8
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.1e-24 116.3 150 46.0
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.1e-24 116.3 150 46.0
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 3.1e-24 116.3 172 43.0
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 9.1e-24 114.8 140 47.1
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 2.0e-23 113.6 116 53.4
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 3.8e-22 109.4 118 53.4
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.5e-21 107.5 113 52.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.9e-21 107.1 156 39.1
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 5.5e-21 105.5 119 49.6
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.2e-21 105.1 131 48.1
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.1e-20 103.6 119 50.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 3.6e-20 102.8 172 40.1
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 3.0e-19 99.8 83 59.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-18 97.8 129 45.0
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.6e-18 96.7 85 60.0
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.2e-17 93.6 112 46.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.3e-14 83.6 67 64.2
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.6e-12 77.4 83 51.8
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.4e-10 69.7 79 49.4
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-08 64.7 170 26.5
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 3.5e-07 59.7 44 61.4
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 4.5e-07 59.3 148 32.4
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.0e-06 58.2 75 45.3
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 3.8e-06 56.2 79 44.3
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 8.6e-06 55.1 163 31.3


User provided reference genes

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