Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0373400 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.8e-176 622.5 309 100.0
Os12g0564800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 6.8e-27 125.6 231 38.5
Os11g0606400 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D030311 4.4e-26 122.9 254 34.3
Zm00001eb136790 Zea mays HOM05D000011 ORTHO05D000157 7.1e-24 115.5 266 36.5
Os11g0605100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D030311 3.0e-22 110.2 254 31.9
Os12g0565200 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 2.5e-21 107.1 244 36.1
Os08g0412100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.2e-20 104.8 265 34.0
Os11g0606800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D030311 4.7e-20 102.8 241 33.6
Os11g0629600 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 8.1e-20 102.1 264 33.0
Os11g0686400 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 1.4e-19 101.3 294 28.6
Os11g0684100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 1.5e-18 97.8 270 28.9
Os11g0249000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 4.4e-18 96.3 263 31.2
Os11g0238700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.4e-16 91.3 270 33.0
Zm00001eb164940 Zea mays HOM05D000011 ORTHO05D014245 1.9e-16 90.9 257 31.5
Zm00001eb253770 Zea mays HOM05D000011 ORTHO05D000157 1.9e-16 90.9 259 30.5
Os08g0373000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 4.1e-16 89.7 252 30.2
Os11g0237900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.6e-15 87.8 268 35.1
Os11g0225300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 2.1e-15 87.4 263 30.0
Os11g0685600 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 2.7e-15 87.0 285 26.3
Os11g0237600 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 4.6e-15 86.3 290 30.7
Os08g0388300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 6.0e-15 85.9 261 29.5
Os08g0396700 Oryza sativa ssp. japonica HOM05D000790 ORTHO05D000769 1.3e-14 84.7 264 29.9
Os11g0686900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 1.3e-14 84.7 243 31.3
Os08g0176633 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 2.3e-14 84.0 227 32.2
Os11g0605600 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D017099 2.3e-14 84.0 271 29.2
Os12g0272800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 2.3e-14 84.0 275 28.7
Os08g0372700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 3.9e-14 83.2 257 29.2
RcHm_v2.0_Chr7g0212451 Rosa chinensis HOM05D000011 ORTHO05D000157 3.9e-14 83.2 216 34.3
Prupe.5G025600 Prunus persica HOM05D000011 ORTHO05D000157 3.3e-13 80.1 217 32.7
Os10g0133000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D293626 5.6e-13 79.3 164 34.1
Os08g0174800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 9.6e-13 78.6 250 26.0
CSS0025652 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 1.6e-12 77.8 224 34.4
TAR626G1253 Trochodendron aralioides HOM05D000011 ORTHO05D000157 1.6e-12 77.8 223 30.5
MD06G1024500 Malus domestica HOM05D000011 ORTHO05D000157 3.6e-12 76.6 217 32.3
CANSAT11G0198 Cannabis sativa HOM05D000011 ORTHO05D000157 8.1e-12 75.5 248 31.0
Os11g0223201 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 8.1e-12 75.5 288 30.2
FvH4_5g23400 Fragaria vesca HOM05D000011 ORTHO05D000157 1.8e-11 74.3 216 33.8
FAN18G2407 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.8e-11 74.3 216 33.8
FAN18G2631 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.8e-11 74.3 216 33.8
Gohir.A12G204900 Gossypium hirsutum HOM05D000011 ORTHO05D000157 1.8e-11 74.3 220 33.6
RcHm_v2.0_Chr7g0212471 Rosa chinensis HOM05D000011 ORTHO05D000157 1.8e-11 74.3 216 32.9
Gohir.D12G207300 Gossypium hirsutum HOM05D000011 ORTHO05D000157 2.4e-11 73.9 220 33.2
Gorai.008G222700 Gossypium raimondii HOM05D000011 ORTHO05D000157 2.4e-11 73.9 220 33.2
CSS0019885 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 3.1e-11 73.6 226 34.5
FAN04G2275 Fragaria x ananassa HOM05D000011 ORTHO05D000157 5.2e-11 72.8 216 32.9
Potri.003G099100 Populus trichocarpa HOM05D000011 ORTHO05D000157 6.9e-11 72.4 222 31.5
MBI15_g00870_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 8.9e-11 72.0 234 30.3
Nn1g09255 Nelumbo nucifera HOM05D000011 ORTHO05D000157 8.9e-11 72.0 251 27.1
Os08g0387700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 8.9e-11 72.0 257 29.6
Os07g0197500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 3.4e-10 70.1 261 28.7
Os08g0411850 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D296640 4.4e-10 69.7 162 31.5
Zm00001eb174770 Zea mays HOM05D000011 ORTHO05D000157 4.4e-10 69.7 257 28.0
MD07G1258600 Malus domestica HOM05D000011 ORTHO05D000157 9.9e-10 68.6 220 28.2
Os11g0258500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 2.9e-09 67.0 300 28.3
Os12g0237900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 2.9e-09 67.0 233 29.2
QL08p002780 Quercus lobata HOM05D000011 ORTHO05D000157 6.4e-09 65.9 228 31.1
Zm00001eb115050 Zea mays HOM05D000011 ORTHO05D030311 6.4e-09 65.9 195 27.2
Cfa006198 Carpinus fangiana HOM05D000011 ORTHO05D000157 8.4e-09 65.5 218 31.7
Os07g0197300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.1e-08 65.1 269 27.1
QL08p002354 Quercus lobata HOM05D000011 ORTHO05D000157 1.1e-08 65.1 223 29.1
RcHm_v2.0_Chr1g0375241 Rosa chinensis HOM05D000011 ORTHO05D000157 1.1e-08 65.1 223 28.7
RcHm_v2.0_Chr7g0212631 Rosa chinensis HOM05D000011 ORTHO05D000157 1.9e-08 64.3 220 30.5
TAR633G1439 Trochodendron aralioides HOM05D000011 ORTHO05D000157 1.9e-08 64.3 198 33.3
QL08p002832 Quercus lobata HOM05D000011 ORTHO05D000157 2.4e-08 63.9 218 30.3
TAR362G0443 Trochodendron aralioides HOM05D000011 ORTHO05D000157 2.4e-08 63.9 220 30.5
Zm00001eb112770 Zea mays HOM05D000011 ORTHO05D000157 2.4e-08 63.9 258 29.5
COL.COLO4_29211 Corchorus olitorius HOM05D000011 ORTHO05D000157 4.2e-08 63.2 287 26.8
Dinv29022 Davidia involucrata HOM05D000011 ORTHO05D000157 5.4e-08 62.8 217 30.4
Medtr3g056190 Medicago truncatula HOM05D000011 ORTHO05D000157 5.4e-08 62.8 245 27.3
TAR633G2128 Trochodendron aralioides HOM05D000011 ORTHO05D000157 5.4e-08 62.8 198 32.8
Zm00001eb042890 Zea mays HOM05D000011 ORTHO05D000157 5.4e-08 62.8 265 26.4
TPR.G5150 Trifolium pratense HOM05D000011 ORTHO05D000157 7.1e-08 62.4 236 28.4
TWI60G1345 Tripterygium wilfordii HOM05D000011 ORTHO05D000157 7.1e-08 62.4 218 29.8
Cfa021556 Carpinus fangiana HOM05D000011 ORTHO05D000157 9.3e-08 62.0 218 28.9
Dinv22737 Davidia involucrata HOM05D000011 ORTHO05D000157 9.3e-08 62.0 219 30.1
MBI14_g41448_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 9.3e-08 62.0 196 29.6
CSS0033798 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 1.6e-07 61.2 235 31.1
Hma1.2p1_0803F.1_g220800 Hydrangea macrophylla HOM05D000011 ORTHO05D000157 1.6e-07 61.2 224 32.6
CSS0037533 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 2.7e-07 60.5 168 33.9
Phvul.005G014200 Phaseolus vulgaris HOM05D000011 ORTHO05D000157 2.7e-07 60.5 220 29.1
Phvul.005G014701 Phaseolus vulgaris HOM05D000011 ORTHO05D000157 2.7e-07 60.5 220 29.1
Os06g0286500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 3.5e-07 60.1 260 26.5
arahy.Tifrunner.gnm1.ann1.K5EKT0 Arachis hypogaea HOM05D000011 ORTHO05D000157 4.6e-07 59.7 158 33.5
CSS0024041 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 4.6e-07 59.7 165 33.3
CSS0046258 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 4.6e-07 59.7 165 33.3
Medtr1g078150 Medicago truncatula HOM05D000011 ORTHO05D000157 4.6e-07 59.7 235 27.2
PGSC0003DMG400044423 Solanum tuberosum HOM05D000011 ORTHO05D000157 4.6e-07 59.7 224 28.1
Aqoxy7G03743 Aquilegia oxysepala HOM05D000011 ORTHO05D000157 6.0e-07 59.3 197 31.5
Ca_20140_v3 Cicer arietinum L. HOM05D000011 ORTHO05D000157 6.0e-07 59.3 163 28.8
TPR.G1966 Trifolium pratense HOM05D000011 ORTHO05D000157 6.0e-07 59.3 228 27.2
Glyma.18G082300 Glycine max HOM05D000011 ORTHO05D000157 7.8e-07 58.9 230 27.4
Os06g0286700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 7.8e-07 58.9 227 28.6
Actinidia05716 Actinidia chinensis HOM05D000011 ORTHO05D000157 1.0e-06 58.5 217 28.6
Nitab4.5_0000743g0040 Nicotiana tabacum HOM05D000011 ORTHO05D000157 1.0e-06 58.5 221 27.1
Sc01g0004100 Simmondsia chinensis HOM05D000011 ORTHO05D000157 1.0e-06 58.5 218 29.4
arahy.Tifrunner.gnm1.ann1.M76BEQ Arachis hypogaea HOM05D000308 ORTHO05D000157 1.3e-06 58.2 154 33.1
VMungo1080G0115 Vigna mungo HOM05D000011 ORTHO05D000157 1.3e-06 58.2 250 27.2
CANSAT11G0313 Cannabis sativa HOM05D000011 ORTHO05D000157 1.7e-06 57.8 192 30.2
Migut.F01791 Erythranthe guttata HOM05D000011 ORTHO05D000157 1.7e-06 57.8 225 28.9
Sc01g0004130 Simmondsia chinensis HOM05D000011 ORTHO05D000157 1.7e-06 57.8 218 28.9
Zm00001eb283200 Zea mays HOM05D000011 ORTHO05D000157 1.7e-06 57.8 250 26.0
Ciclev10010679m.g Citrus clementina HOM05D000011 ORTHO05D000157 2.3e-06 57.4 215 27.9
COL.COLO4_29223 Corchorus olitorius HOM05D000011 ORTHO05D000157 2.3e-06 57.4 220 30.5
TAR362G0141 Trochodendron aralioides HOM05D000011 ORTHO05D000157 2.3e-06 57.4 201 28.9
COL.COLO4_26674 Corchorus olitorius HOM05D000011 ORTHO05D000157 3.9e-06 56.6 248 26.2
Dinv06497 Davidia involucrata HOM05D000011 ORTHO05D000157 3.9e-06 56.6 197 29.9
MBI14_g11110_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 3.9e-06 56.6 224 29.0
Medtr3g011480 Medicago truncatula HOM05D000011 ORTHO05D000157 3.9e-06 56.6 221 26.7
CSS0026571 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 5.1e-06 56.2 229 31.9
EL10As14g24079 Beta vulgaris HOM05D000011 ORTHO05D000157 6.6e-06 55.8 196 26.5
Lj3g0010698 Lotus japonicus HOM05D000011 ORTHO05D000157 6.6e-06 55.8 167 29.3
Sopen11g004940 Solanum pennellii HOM05D000011 ORTHO05D000157 8.7e-06 55.5 224 28.1


User provided reference genes

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