Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0367625 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D025120 4.8e-94 348.2 227 100.0
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.2e-13 79.7 49 81.6
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.2e-13 79.7 49 81.6
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 2.0e-12 77.0 49 81.6
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 2.0e-12 77.0 49 81.6
Os01g0833700 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.0e-11 73.2 49 77.6
Lj9C298T10 Lonicera japonica HOM05D002990 ORTHO05D003954 1.0e-08 64.7 49 71.4
MBI19_g42889_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.0e-08 64.7 49 69.4
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 1.0e-08 64.7 49 69.4
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.8e-08 63.9 50 66.0
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 2.3e-08 63.5 49 69.4
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 2.3e-08 63.5 49 69.4
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 3.1e-08 63.2 51 64.7
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 3.1e-08 63.2 49 69.4
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 4.0e-08 62.8 49 71.4
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 4.0e-08 62.8 49 65.3
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 5.2e-08 62.4 49 67.3
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 5.2e-08 62.4 49 67.3
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 5.2e-08 62.4 49 69.4
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 5.2e-08 62.4 49 69.4
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 6.8e-08 62.0 49 65.3
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 6.8e-08 62.0 49 65.3
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 6.8e-08 62.0 49 67.3
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 8.9e-08 61.6 49 67.3
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 8.9e-08 61.6 49 69.4
PGR065G0001 Punica granatum HOM05D002990 ORTHO05D003954 8.9e-08 61.6 49 69.4
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 8.9e-08 61.6 49 67.3
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 8.9e-08 61.6 51 64.7
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.2e-07 61.2 49 67.3
Lj5C267G4 Lonicera japonica HOM05D002990 ORTHO05D003954 1.2e-07 61.2 49 65.3
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 1.2e-07 61.2 49 67.3
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 1.2e-07 61.2 51 64.7
Haze_04601 Corylus avellana HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 65.3
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 1.5e-07 60.8 49 61.2
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 2.0e-07 60.5 49 65.3
MBI14_g22163_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 2.0e-07 60.5 49 63.3
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 2.0e-07 60.5 49 67.3
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 2.0e-07 60.5 51 62.7
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 2.6e-07 60.1 49 65.3
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 2.6e-07 60.1 51 62.7
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 2.6e-07 60.1 49 63.3
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 2.6e-07 60.1 49 65.3
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 2.6e-07 60.1 49 67.3
Haze_16449 Corylus avellana HOM05D002990 ORTHO05D003954 2.6e-07 60.1 49 65.3
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 2.6e-07 60.1 49 65.3
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 61.2
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 63.3
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.4e-07 59.7 50 64.0
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 3.4e-07 59.7 50 64.0
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 63.3
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 67.3
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 65.3
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 65.3
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 3.4e-07 59.7 49 63.3
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 4.4e-07 59.3 51 64.7
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 4.4e-07 59.3 51 62.7
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 65.3
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 63.3
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.4e-07 59.3 50 64.0
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 63.3
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 63.3
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 67.3
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 65.3
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 65.3
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 65.3
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 4.4e-07 59.3 49 63.3
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 4.4e-07 59.3 51 60.8
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 5.8e-07 58.9 51 62.7
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 5.8e-07 58.9 49 65.3
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 5.8e-07 58.9 51 64.7
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 5.8e-07 58.9 49 63.3
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 5.8e-07 58.9 49 65.3
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 5.8e-07 58.9 51 60.8
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 5.8e-07 58.9 51 64.7
Cc00_g30140 Coffea canephora HOM05D002990 ORTHO05D025120 7.5e-07 58.5 51 62.7
Cc08_g04530 Coffea canephora HOM05D002990 ORTHO05D025120 7.5e-07 58.5 51 62.7
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 7.5e-07 58.5 51 64.7
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 7.5e-07 58.5 52 61.5
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 7.5e-07 58.5 49 65.3
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 7.5e-07 58.5 51 62.7
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 7.5e-07 58.5 51 62.7
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 7.5e-07 58.5 49 65.3
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 63.3
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 9.8e-07 58.2 51 62.7
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 65.3
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 67.3
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 9.8e-07 58.2 51 62.7
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 9.8e-07 58.2 51 62.7
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 63.3
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 65.3
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 63.3
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 9.8e-07 58.2 49 59.2
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 1.3e-06 57.8 47 66.0
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 1.3e-06 57.8 49 65.3
MBI15_g43444_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.3e-06 57.8 61 54.1
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 1.7e-06 57.4 49 65.3
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 1.7e-06 57.4 49 65.3
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 1.7e-06 57.4 49 61.2
Cc00_g35830 Coffea canephora HOM05D002990 ORTHO05D025120 1.7e-06 57.4 49 63.3
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 1.7e-06 57.4 49 65.3
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 1.7e-06 57.4 51 60.8
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 1.7e-06 57.4 49 59.2
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.7e-06 57.4 49 61.2
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 2.2e-06 57.0 49 65.3
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 2.2e-06 57.0 49 65.3
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 2.2e-06 57.0 49 65.3
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 61.2
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 61.2
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 59.2
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 63.3
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 2.9e-06 56.6 48 62.5
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 63.3
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 2.9e-06 56.6 48 60.4
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 61.2
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 59.2
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 2.9e-06 56.6 51 62.7
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 2.9e-06 56.6 49 61.2
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 3.7e-06 56.2 49 63.3
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 3.7e-06 56.2 49 61.2
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 3.7e-06 56.2 49 59.2
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 3.7e-06 56.2 49 59.2
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 4.9e-06 55.8 49 59.2
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 4.9e-06 55.8 49 65.3
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 4.9e-06 55.8 51 58.8
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 6.4e-06 55.5 49 61.2
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 6.4e-06 55.5 49 61.2
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 6.4e-06 55.5 49 61.2
Nitab4.5_0000787g0120 Nicotiana tabacum HOM05D002990 ORTHO05D003954 6.4e-06 55.5 49 61.2
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 6.4e-06 55.5 49 61.2
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 8.3e-06 55.1 49 61.2
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 8.3e-06 55.1 49 61.2


User provided reference genes

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