Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0363800 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 9.8e-46 186.4 93 100.0
Os08g0369700 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 3.9e-26 121.3 67 91.0
Zm00001eb170730 Zea mays HOM05D005004 ORTHO05D006097 5.6e-25 117.5 65 87.7
Zm00001eb042730 Zea mays HOM05D005004 ORTHO05D006097 2.8e-24 115.2 67 83.6
Nitab4.5_0004873g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 1.1e-23 113.2 81 72.8
Nitab4.5_0000368g0180 Nicotiana tabacum HOM05D005004 ORTHO05D006097 6.8e-23 110.5 64 85.9
Nitab4.5_0003512g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 6.8e-23 110.5 64 85.9
Hund03985 Selenicereus undatus HOM05D005004 ORTHO05D006097 1.2e-22 109.8 68 77.9
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.0e-22 109.0 64 81.2
CAN.G1164.37 Capsicum annuum HOM05D005004 ORTHO05D006097 2.6e-22 108.6 64 82.8
CAN.G1715.5 Capsicum annuum HOM05D005004 ORTHO05D006097 2.6e-22 108.6 64 82.8
Peaxi162Scf00673g00319 Petunia axillaris HOM05D005004 ORTHO05D006097 2.6e-22 108.6 64 82.8
Sopen01g043930 Solanum pennellii HOM05D005004 ORTHO05D006097 3.4e-22 108.2 64 84.4
Cpa.g.sc5.20 Carica papaya HOM05D005004 ORTHO05D006097 4.4e-22 107.8 65 81.5
Ciclev10012954m.g Citrus clementina HOM05D005004 ORTHO05D006097 4.4e-22 107.8 67 79.1
Solyc01g100410.3 Solanum lycopersicum HOM05D005004 ORTHO05D006097 4.4e-22 107.8 64 84.4
PGSC0003DMG403002803 Solanum tuberosum HOM05D005004 ORTHO05D006097 4.4e-22 107.8 64 84.4
HPP92_018556 Vanilla planifolia HOM05D005004 ORTHO05D006097 4.4e-22 107.8 64 76.6
Aqoxy5G00209 Aquilegia oxysepala HOM05D005004 ORTHO05D006097 5.8e-22 107.5 65 80.0
AUR62006181 Chenopodium quinoa HOM05D005004 ORTHO05D006097 5.8e-22 107.5 77 66.2
MBI17_g08354_MAGBIO Magnolia biondii HOM05D005004 ORTHO05D006097 5.8e-22 107.5 65 81.5
vmacro07408 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 5.8e-22 107.5 64 82.8
CSS0031559 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 9.9e-22 106.7 64 78.1
Eucgr.C01891 Eucalyptus grandis HOM05D005004 ORTHO05D006097 9.9e-22 106.7 68 75.0
unitig_899.g15202 Utricularia gibba HOM05D005004 ORTHO05D006097 9.9e-22 106.7 68 76.5
EL10Ac7g16917 Beta vulgaris HOM05D005004 ORTHO05D006097 1.3e-21 106.3 64 79.7
GSVIVG01033842001 Vitis vinifera HOM05D005004 ORTHO05D006097 1.3e-21 106.3 67 79.1
Duzib093G1830 Durio zibethinus HOM05D005004 ORTHO05D006097 1.7e-21 105.9 70 72.9
Medtr7g104600 Medicago truncatula HOM05D005004 ORTHO05D006097 1.7e-21 105.9 65 75.4
CsaV3_1G033770 Cucumis sativus L. HOM05D005004 ORTHO05D006097 2.2e-21 105.5 67 76.1
Migut.L01778 Erythranthe guttata HOM05D005004 ORTHO05D006097 2.2e-21 105.5 64 76.6
CANSAT80G1737 Cannabis sativa HOM05D005004 ORTHO05D006097 2.9e-21 105.1 67 76.1
Haze_19610 Corylus avellana HOM05D005004 ORTHO05D006097 2.9e-21 105.1 65 75.4
Psat3g033320 Pisum sativum HOM05D005004 ORTHO05D006097 2.9e-21 105.1 65 75.4
Sed0018976 Sechium edule HOM05D005004 ORTHO05D006097 2.9e-21 105.1 67 74.6
Actinidia07927 Actinidia chinensis HOM05D005004 ORTHO05D006097 3.7e-21 104.8 64 76.6
Aa31LG1G21370 Aethionema arabicum HOM05D005004 ORTHO05D006097 3.7e-21 104.8 65 78.5
DCAR_009165 Daucus carota HOM05D005004 ORTHO05D006097 3.7e-21 104.8 64 78.1
SalBow5G1155 Salvia bowleyana HOM05D005004 ORTHO05D006097 3.7e-21 104.8 64 76.6
SGA_v2.0_scaffold184G39963 Striga asiatica HOM05D005004 ORTHO05D006097 3.7e-21 104.8 64 76.6
TAR365G0253 Trochodendron aralioides HOM05D005004 ORTHO05D006097 3.7e-21 104.8 64 78.1
TAR369G1152 Trochodendron aralioides HOM05D005004 ORTHO05D006097 3.7e-21 104.8 64 78.1
MSTRG.10365 Avicennia marina HOM05D005004 ORTHO05D006097 4.9e-21 104.4 68 75.0
A10p32210 Brassica napus HOM05D005004 ORTHO05D006097 4.9e-21 104.4 65 78.5
BraA10t45264Z Brassica rapa HOM05D005004 ORTHO05D006097 4.9e-21 104.4 65 78.5
COL.COLO4_29735 Corchorus olitorius HOM05D005004 ORTHO05D006097 4.9e-21 104.4 65 76.9
THA.LOC104826944 Tarenaya hassleriana HOM05D005004 ORTHO05D006097 4.9e-21 104.4 65 78.5
Cfa016606 Carpinus fangiana HOM05D005004 ORTHO05D006097 6.4e-21 104.0 65 75.4
CDE02G2337 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 6.4e-21 104.0 67 74.6
Lalb_Chr20g0111711 Lupinus albus HOM05D005004 ORTHO05D006097 8.4e-21 103.6 65 76.9
QL07p038766 Quercus lobata HOM05D005004 ORTHO05D006097 8.4e-21 103.6 65 75.4
QL07p039017 Quercus lobata HOM05D005004 ORTHO05D006097 8.4e-21 103.6 65 75.4
SEGI_14769 Sequoiadendron giganteum HOM05D005004 ORTHO05D006097 8.4e-21 103.6 65 73.8
Sc20g0006290 Simmondsia chinensis HOM05D005004 ORTHO05D006097 8.4e-21 103.6 64 75.0
AUR62028526 Chenopodium quinoa HOM05D005004 ORTHO05D006097 1.1e-20 103.2 64 75.0
MELO3C020686.2 Cucumis melo HOM05D005004 ORTHO05D006097 1.1e-20 103.2 67 74.6
Glyma.13G153600 Glycine max HOM05D005004 ORTHO05D006097 1.1e-20 103.2 65 75.4
Actinidia05431 Actinidia chinensis HOM05D005004 ORTHO05D006097 1.4e-20 102.8 64 78.1
arahy.Tifrunner.gnm1.ann1.8NC760 Arachis hypogaea HOM05D005004 ORTHO05D006097 1.4e-20 102.8 65 73.8
CDE04G1264 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 1.4e-20 102.8 67 73.1
ClCG03G002740 Citrullus lanatus HOM05D005004 ORTHO05D006097 1.4e-20 102.8 65 75.4
Dinv21208 Davidia involucrata HOM05D005004 ORTHO05D006097 1.4e-20 102.8 64 76.6
Gohir.A01G138100 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.4e-20 102.8 65 75.4
Gohir.D01G127800 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.4e-20 102.8 65 75.4
Gorai.002G158400 Gossypium raimondii HOM05D005004 ORTHO05D006097 1.4e-20 102.8 65 75.4
Lj1g0017616 Lotus japonicus HOM05D005004 ORTHO05D006097 1.4e-20 102.8 64 75.0
Rhsim03G0075200 Rhododendron simsii HOM05D005004 ORTHO05D006097 1.4e-20 102.8 64 79.7
TWI53G1915 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 1.4e-20 102.8 65 72.3
Atru.chr8.1540 Acer truncatum HOM05D005004 ORTHO05D006097 1.9e-20 102.4 67 70.1
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 1.9e-20 102.4 65 76.9
CSS0009320 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 1.9e-20 102.4 64 75.0
TPR.G30035 Trifolium pratense HOM05D005004 ORTHO05D006097 1.9e-20 102.4 65 73.8
AT5G03905 Arabidopsis thaliana HOM05D005004 ORTHO05D006097 2.4e-20 102.1 65 73.8
CARHR209350 Cardamine hirsuta HOM05D005004 ORTHO05D006097 2.4e-20 102.1 65 73.8
CiPaw.09G013900 Carya illinoinensis HOM05D005004 ORTHO05D006097 2.4e-20 102.1 65 75.4
Dinv31686 Davidia involucrata HOM05D005004 ORTHO05D006097 2.4e-20 102.1 64 76.6
Prupe.5G046500 Prunus persica HOM05D005004 ORTHO05D006097 2.4e-20 102.1 64 78.1
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 2.4e-20 102.1 65 70.8
VMungo1215G1361 Vigna mungo HOM05D005004 ORTHO05D006097 2.4e-20 102.1 65 73.8
ATR0174G014 Amborella trichopoda HOM05D005004 ORTHO05D006097 3.2e-20 101.7 64 76.6
C09p73010 Brassica napus HOM05D005004 ORTHO05D006097 3.2e-20 101.7 65 76.9
BolC9t60036H Brassica oleracea HOM05D005004 ORTHO05D006097 3.2e-20 101.7 65 76.9
Lalb_Chr25g0288321 Lupinus albus HOM05D005004 ORTHO05D006097 3.2e-20 101.7 65 73.8
MD16G1269100 Malus domestica HOM05D005004 ORTHO05D006097 3.2e-20 101.7 64 76.6
Thecc.05G089000 Theobroma cacao HOM05D005004 ORTHO05D006097 3.2e-20 101.7 65 73.8
Gohir.A01G206300 Gossypium hirsutum HOM05D005004 ORTHO05D006097 4.1e-20 101.3 65 73.8
Gohir.D01G195700 Gossypium hirsutum HOM05D005004 ORTHO05D006097 4.1e-20 101.3 65 73.8
Gorai.002G239900 Gossypium raimondii HOM05D005004 ORTHO05D006097 4.1e-20 101.3 65 73.8
Lj1g0020740 Lotus japonicus HOM05D005004 ORTHO05D006097 4.1e-20 101.3 66 77.3
Sed0022281 Sechium edule HOM05D005004 ORTHO05D006097 4.1e-20 101.3 65 75.4
TAR623G0616 Trochodendron aralioides HOM05D005004 ORTHO05D006097 4.1e-20 101.3 64 78.1
CsaV3_1G013480 Cucumis sativus L. HOM05D005004 ORTHO05D006097 5.4e-20 100.9 65 73.8
Nn6g34902 Nelumbo nucifera HOM05D005004 ORTHO05D006097 5.4e-20 100.9 65 73.8
Cc06_g05740 Coffea canephora HOM05D005004 ORTHO05D006097 7.1e-20 100.5 68 72.1
Eucgr.K02041 Eucalyptus grandis HOM05D005004 ORTHO05D006097 7.1e-20 100.5 64 75.0
Eucgr.L03536 Eucalyptus grandis HOM05D005004 ORTHO05D006097 7.1e-20 100.5 64 75.0
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 7.1e-20 100.5 64 73.4
Lj2A137T29 Lonicera japonica HOM05D005004 ORTHO05D006097 7.1e-20 100.5 64 75.0
AL6G13490 Arabidopsis lyrata HOM05D005004 ORTHO05D006097 9.2e-20 100.1 65 73.8
BcaC06g32094 Brassica carinata HOM05D005004 ORTHO05D006097 9.2e-20 100.1 65 75.4
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 9.2e-20 100.1 65 73.8
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 9.2e-20 100.1 65 73.8
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 9.2e-20 100.1 65 75.4
PGR142G4351 Punica granatum HOM05D005004 ORTHO05D006097 9.2e-20 100.1 64 75.0
Phvul.003G095500 Phaseolus vulgaris HOM05D005004 ORTHO05D006097 1.2e-19 99.8 65 70.8
BcaB05g21795 Brassica carinata HOM05D005004 ORTHO05D006097 1.6e-19 99.4 65 73.8
C02p01610 Brassica napus HOM05D005004 ORTHO05D006097 1.6e-19 99.4 65 73.8
BolC2t06126H Brassica oleracea HOM05D005004 ORTHO05D006097 1.6e-19 99.4 65 73.8
MD06G1040300 Malus domestica HOM05D005004 ORTHO05D006097 1.6e-19 99.4 64 75.0
Sabra06G0064000 Salix brachista HOM05D005004 ORTHO05D006097 2.1e-19 99.0 68 69.1
BcaC03g12976 Brassica carinata HOM05D005004 ORTHO05D006097 2.7e-19 98.6 65 73.8
Duzib106G1905 Durio zibethinus HOM05D005004 ORTHO05D006097 2.7e-19 98.6 65 70.8
Sp6g38820 Schrenkiella parvula HOM05D005004 ORTHO05D006097 2.7e-19 98.6 65 72.3
SGA_v2.0_scaffold35G14070 Striga asiatica HOM05D005004 ORTHO05D006097 3.5e-19 98.2 71 70.4
BraA02t04792Z Brassica rapa HOM05D005004 ORTHO05D006097 4.6e-19 97.8 65 72.3
FvH4_6g18690 Fragaria vesca HOM05D005004 ORTHO05D006097 4.6e-19 97.8 65 75.4
FAN02G1574 Fragaria x ananassa HOM05D005004 ORTHO05D006097 4.6e-19 97.8 65 75.4
FAN09G0264 Fragaria x ananassa HOM05D005004 ORTHO05D006097 4.6e-19 97.8 65 75.4
FAN14G5527 Fragaria x ananassa HOM05D005004 ORTHO05D006097 4.6e-19 97.8 65 75.4
ECA236G3187 Erigeron canadensis HOM05D005004 ORTHO05D006097 6.0e-19 97.4 64 71.9
Potri.006G084300 Populus trichocarpa HOM05D005004 ORTHO05D006097 6.0e-19 97.4 65 69.2
HanXRQChr15g0491011 Helianthus annuus HOM05D005004 ORTHO05D006097 7.8e-19 97.1 64 71.9
HanXRQChr17g0554781 Helianthus annuus HOM05D005004 ORTHO05D006097 7.8e-19 97.1 64 71.9
Hma1.2p1_0580F.1_g182880 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 7.8e-19 97.1 64 73.4
RcHm_v2.0_Chr3g0473661 Rosa chinensis HOM05D005004 ORTHO05D006097 1.0e-18 96.7 65 73.8
FAN05G0382 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.3e-18 96.3 65 73.8
FAN05G5799 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.3e-18 96.3 65 73.8
Pp3c3_34710 Physcomitrium patens HOM05D005004 ORTHO05D006097 1.3e-18 96.3 64 68.8
SalBow5G4790 Salvia bowleyana HOM05D005004 ORTHO05D006097 1.3e-18 96.3 64 71.9
SMO171G0092 Selaginella moellendorffii HOM05D005004 ORTHO05D006097 1.7e-18 95.9 65 66.2
ClCG03G001800 Citrullus lanatus HOM05D005004 ORTHO05D006097 2.3e-18 95.5 80 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 3.0e-18 95.1 65 66.2
CBR_g27757 Chara braunii HOM05D005004 ORTHO05D006097 3.0e-18 95.1 64 68.8
Aa31LG3G2670 Aethionema arabicum HOM05D005004 ORTHO05D006097 6.6e-18 94.0 65 69.2
arahy.Tifrunner.gnm1.ann1.E5K2FZ Arachis hypogaea HOM05D005004 ORTHO05D006097 1.1e-17 93.2 73 64.4
PSO339G3768 Papaver somniferum HOM05D005004 ORTHO05D006097 5.6e-17 90.9 65 70.8
PSO384G4260 Papaver somniferum HOM05D005004 ORTHO05D006097 5.6e-17 90.9 65 70.8
Mapoly0089s0053 Marchantia polymorpha HOM05D005004 ORTHO05D006097 3.6e-16 88.2 64 65.6
Hma1.2p1_3639F.1_g337130 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 5.8e-14 80.9 69 60.9
MCO02G129 Micromonas commoda HOM05D005004 ORTHO05D006097 7.6e-14 80.5 64 54.7
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 2.9e-13 78.6 53 67.9
Glyma.03G195800 Glycine max HOM05D005004 ORTHO05D006097 1.7e-10 69.3 65 55.4
Cre07.g349600 Chlamydomonas reinhardtii HOM05D005004 ORTHO05D006097 7.3e-09 63.9 67 40.3
PRCOL_00000026 Prasinoderma coloniale HOM05D005004 ORTHO05D006097 4.8e-08 61.2 91 41.8
vmacro08717 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 3.1e-07 58.5 35 82.9
Pp3s30_920 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.2e-06 56.6 63 41.3
Cc06_g20090 Coffea canephora HOM05D005004 ORTHO05D006097 2.0e-06 55.8 37 73.0


User provided reference genes

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