Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.5e-186 656.0 317 100.0
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 9.8e-138 493.8 322 73.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 7.0e-136 487.6 324 71.0
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.6e-132 475.3 324 70.1
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.7e-132 474.9 324 71.3
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.7e-132 474.9 321 70.4
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.0e-131 473.8 320 71.9
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 4.0e-131 471.9 320 71.2
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 4.0e-131 471.9 322 71.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 6.8e-131 471.1 321 72.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 6.8e-131 471.1 321 70.1
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 6.8e-131 471.1 323 70.6
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.5e-130 469.9 318 70.8
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.6e-130 469.2 324 70.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.2e-129 466.1 317 70.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.2e-129 466.1 321 71.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.9e-129 465.7 319 68.3
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 8.3e-129 464.2 318 70.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.1e-128 463.8 321 69.5
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 1.4e-128 463.4 318 71.4
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.4e-128 463.4 320 70.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.8e-128 463.0 320 69.4
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 2.4e-128 462.6 318 70.4
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 7.0e-128 461.1 319 69.0
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 9.2e-128 460.7 321 71.3
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-127 460.3 317 70.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.2e-127 460.3 318 68.9
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.0e-127 459.5 319 67.7
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.7e-127 459.1 318 69.5
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.7e-127 459.1 319 69.9
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 4.6e-127 458.4 318 68.6
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 4.6e-127 458.4 319 70.2
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 5.9e-127 458.0 318 69.8
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 5.9e-127 458.0 320 68.4
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 7.8e-127 457.6 319 68.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 7.8e-127 457.6 341 64.8
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.0e-126 457.2 319 66.8
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.7e-126 456.4 318 68.2
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.0e-126 455.7 318 68.6
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 6.6e-126 454.5 318 67.6
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 6.6e-126 454.5 318 67.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.1e-125 453.8 323 69.3
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.5e-125 453.4 319 67.1
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.5e-125 453.4 317 68.8
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.9e-125 453.0 320 67.5
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.5e-125 452.6 318 69.5
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.5e-125 452.6 314 68.2
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.5e-125 452.6 321 67.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 5.6e-125 451.4 320 68.4
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 7.3e-125 451.1 319 66.8
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 9.5e-125 450.7 319 67.4
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 9.5e-125 450.7 324 69.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.2e-124 450.3 319 68.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.2e-124 450.3 319 67.4
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 2.1e-124 449.5 317 68.5
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.1e-124 449.5 319 68.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.8e-124 449.1 318 67.6
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.8e-124 449.1 319 67.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 3.6e-124 448.7 318 67.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.6e-124 448.7 319 68.0
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.6e-124 448.7 318 67.0
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.6e-124 448.7 318 69.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 8.0e-124 447.6 321 67.6
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.8e-123 446.4 335 64.5
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.8e-123 446.4 317 68.1
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.8e-123 446.4 317 66.9
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.8e-123 446.4 318 66.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 5.2e-123 444.9 317 68.1
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 5.2e-123 444.9 317 67.8
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 5.2e-123 444.9 317 67.8
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.2e-123 444.9 318 66.0
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 6.8e-123 444.5 317 67.8
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 6.8e-123 444.5 317 68.1
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 6.8e-123 444.5 319 66.5
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-122 443.7 317 68.1
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.2e-122 443.7 320 68.4
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.2e-122 443.7 315 67.0
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-122 443.0 317 67.5
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.6e-122 442.6 317 67.8
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 3.4e-122 442.2 317 67.2
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.4e-122 441.8 317 66.6
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.4e-122 441.8 317 66.6
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.8e-122 441.4 319 66.5
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 5.8e-122 441.4 317 66.2
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.8e-122 440.7 320 67.5
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.3e-121 440.3 320 67.8
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.3e-121 440.3 317 67.2
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.3e-121 440.3 320 66.9
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 2.9e-121 439.1 320 66.6
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.9e-121 438.3 318 65.4
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 8.3e-121 437.6 305 69.8
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.9e-120 436.4 317 63.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.4e-120 436.0 318 66.7
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.4e-120 436.0 372 59.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.2e-120 435.6 320 66.6
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.7e-119 432.6 373 59.5
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.5e-119 432.2 317 67.5
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.3e-118 430.3 323 67.2
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 6.6e-118 427.9 320 64.4
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 6.6e-118 427.9 318 65.7
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.6e-118 427.6 290 73.1
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 3.3e-117 425.6 309 65.7
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.5e-117 424.1 317 65.9
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.6e-116 423.3 317 65.9
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.6e-116 423.3 318 66.0
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 2.1e-116 422.9 319 65.2
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 8.1e-116 421.0 318 63.2
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-115 420.6 318 63.2
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.3e-115 419.5 320 64.1
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.6e-114 416.0 317 64.7
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.6e-114 416.0 328 62.8
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.2e-113 412.9 317 65.0
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 6.4e-113 411.4 392 54.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 8.3e-113 411.0 316 63.0
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.4e-112 409.5 317 63.4
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 7.8e-111 404.4 280 68.6
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-110 403.3 408 52.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.3e-110 402.9 319 63.6
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.7e-108 395.2 295 63.4
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.8e-107 393.3 329 60.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.5e-106 390.2 338 56.2
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.4e-106 389.0 317 59.6
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.4e-106 388.7 317 59.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 4.9e-105 385.2 269 71.0
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.5e-101 372.9 316 58.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.6e-100 370.2 291 65.3
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 2.8e-100 369.4 304 60.9
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.2e-98 364.0 337 55.8
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 5.8e-98 361.7 322 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 2.9e-97 359.4 319 58.0
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.2e-95 354.0 320 55.9
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 3.5e-95 352.4 324 54.9
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.3e-94 350.5 324 56.8
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.2e-90 337.4 336 50.6
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.4e-89 331.6 317 52.4
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 4.3e-85 318.9 294 55.4
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.6e-84 315.8 227 67.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.9e-80 303.5 245 63.3
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.3e-78 297.4 356 46.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.8e-76 289.7 203 68.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.9e-70 269.2 167 79.0
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 3.3e-69 266.2 218 57.8
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 7.4e-69 265.0 206 65.0
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.6e-66 256.5 185 69.7
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 6.3e-60 235.3 188 62.8
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.4e-54 217.6 303 44.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.3e-52 211.1 153 68.6
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.1e-48 198.0 140 64.3
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 5.5e-48 195.7 147 66.7
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.2e-40 168.7 145 55.2
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 6.7e-38 162.2 123 65.0
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 4.8e-36 156.0 135 58.5
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-34 151.0 94 70.2
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.6e-31 141.0 91 69.2
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.4e-30 137.9 110 60.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.7e-28 131.0 92 68.5
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.3e-25 121.3 70 77.1
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.3e-25 120.6 102 61.8
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 4.2e-24 116.3 76 67.1
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 7.5e-21 105.5 91 52.7
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.3e-20 104.8 68 67.6
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.4e-19 100.5 73 56.2
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 7.8e-18 95.5 146 41.1
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.5e-16 91.3 57 66.7
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 4.3e-16 89.7 73 60.3
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 2.3e-09 67.4 41 73.2
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.6e-07 61.2 56 57.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.6e-07 60.1 39 66.7
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.7e-07 59.7 76 51.3


User provided reference genes

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