Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.4e-262 908.3 454 100.0
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 2.1e-194 682.6 472 73.9
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.0e-156 557.4 446 66.1
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.0e-156 555.8 445 65.6
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.3e-155 552.4 456 63.8
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 8.2e-154 547.7 451 63.9
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.8e-153 546.6 448 63.2
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.0e-151 538.5 445 62.9
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 5.0e-151 538.5 445 62.9
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 5.0e-151 538.5 445 63.1
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 6.5e-151 538.1 446 63.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.5e-151 538.1 445 63.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.4e-150 537.0 463 62.9
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 9.3e-150 534.3 446 63.9
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.6e-149 533.5 445 62.7
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.3e-148 529.6 446 64.1
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.0e-148 529.3 453 61.8
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 6.7e-148 528.1 450 63.8
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 8.8e-148 527.7 460 62.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.5e-147 526.9 446 61.4
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.5e-147 526.9 446 62.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.7e-147 525.0 445 62.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 5.7e-147 525.0 464 62.1
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.3e-146 523.9 445 62.5
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.3e-146 523.9 445 62.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.1e-145 518.8 456 61.0
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.3e-145 518.5 464 59.5
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 6.9e-145 518.1 453 60.9
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.2e-144 517.3 436 63.1
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.0e-144 516.5 423 63.6
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.0e-144 516.5 444 61.0
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 2.0e-144 516.5 445 61.6
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.6e-144 516.2 447 62.4
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 4.5e-144 515.4 459 59.7
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 7.7e-144 514.6 446 62.6
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.0e-143 514.2 445 62.2
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.0e-143 514.2 445 61.1
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.3e-143 513.8 445 61.1
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 2.9e-143 512.7 448 62.5
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.9e-143 512.7 464 59.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.9e-143 512.7 445 61.1
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.5e-143 511.5 444 60.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.4e-142 510.4 446 61.2
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.4e-142 510.4 450 62.4
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.9e-142 510.0 446 62.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 3.2e-142 509.2 451 61.4
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.2e-142 509.2 446 61.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.2e-142 508.8 444 60.1
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.2e-142 508.8 446 61.0
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 7.2e-142 508.1 450 62.2
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.6e-141 506.9 445 60.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.6e-141 506.9 449 61.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 4.7e-141 505.4 457 60.2
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.7e-141 505.4 446 61.0
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 4.7e-141 505.4 444 60.8
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.0e-140 504.2 447 60.4
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.0e-140 504.2 447 60.2
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.0e-140 504.2 446 61.0
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 6.7e-140 501.5 446 60.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 6.7e-140 501.5 455 59.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 2.0e-139 500.0 473 58.1
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.6e-139 499.6 453 59.6
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.3e-139 499.2 450 59.1
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 5.7e-139 498.4 444 60.6
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 5.7e-139 498.4 446 59.9
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-138 496.1 445 59.3
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.8e-138 496.1 444 59.7
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 3.7e-138 495.7 451 60.1
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.8e-138 495.4 444 60.1
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 8.2e-138 494.6 436 61.2
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.1e-137 494.2 445 59.6
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.4e-137 493.8 440 59.5
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.4e-137 493.8 444 60.4
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.8e-137 493.4 446 59.0
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.8e-137 493.4 444 59.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 2.4e-137 493.0 538 51.9
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 3.1e-137 492.7 442 59.7
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.1e-137 492.7 479 57.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 5.3e-137 491.9 444 58.8
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.3e-137 491.9 449 59.9
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.3e-137 491.9 444 60.1
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.1e-137 491.1 448 59.6
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.2e-136 490.7 438 61.0
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.5e-136 490.3 444 58.8
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.0e-136 490.0 444 59.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.6e-136 489.6 444 58.3
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.4e-136 489.2 444 58.8
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 4.5e-136 488.8 447 58.8
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 4.5e-136 488.8 447 58.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 4.5e-136 488.8 447 58.8
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.5e-136 488.8 448 58.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 5.9e-136 488.4 444 58.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.9e-136 488.4 443 60.0
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 2.2e-135 486.5 450 58.9
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.8e-135 485.7 446 58.5
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-135 485.7 444 58.6
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.1e-134 484.2 444 59.0
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.1e-134 484.2 448 59.4
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.9e-134 483.4 450 57.1
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 4.2e-134 482.3 441 58.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 9.4e-134 481.1 446 58.1
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 9.4e-134 481.1 458 58.1
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.2e-133 480.7 443 58.7
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.1e-133 479.9 444 58.3
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 4.7e-133 478.8 446 57.6
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.7e-133 478.8 444 57.7
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.0e-132 477.6 445 59.8
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.4e-132 477.2 458 57.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 3.0e-132 476.1 478 57.1
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 3.9e-132 475.7 447 58.2
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 5.2e-132 475.3 446 58.7
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 8.8e-132 474.6 446 58.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.1e-131 474.2 447 58.2
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 4.4e-131 472.2 449 56.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-129 467.6 445 57.3
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 7.0e-129 464.9 452 55.5
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 5.9e-128 461.8 445 56.9
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.7e-128 461.5 440 56.4
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-126 456.8 436 58.0
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.6e-125 453.8 428 59.6
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 4.7e-125 452.2 445 56.4
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 4.7e-125 452.2 448 56.0
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 3.0e-124 449.5 513 49.9
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.1e-121 441.0 422 57.8
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 7.7e-120 434.9 410 57.3
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.5e-118 430.6 458 53.9
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.0e-116 422.5 390 58.5
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.6e-115 419.9 464 50.9
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 1.1e-110 404.4 469 52.2
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.3e-110 402.9 443 51.2
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 2.4e-105 386.7 291 69.8
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 4.1e-105 386.0 458 49.8
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-104 384.4 412 54.1
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 7.5e-99 365.2 462 48.7
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.1e-97 361.3 334 57.2
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.0e-95 352.4 277 67.5
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 9.5e-94 348.2 514 44.2
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.5e-91 340.9 216 80.1
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.7e-90 337.4 306 59.8
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.9e-87 326.2 334 56.3
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 3.4e-83 313.2 229 68.6
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.7e-82 309.7 467 41.8
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.7e-74 284.3 329 51.7
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.9e-74 282.7 320 51.6
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 2.4e-65 253.8 195 65.6
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.2e-64 251.5 195 66.7
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 8.7e-63 245.4 195 61.0
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 8.7e-63 245.4 187 68.4
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.2e-56 224.9 157 71.3
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.5e-51 208.0 241 49.8
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.7e-50 204.5 272 45.6
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 6.0e-48 196.1 119 76.5
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 7.9e-48 195.7 472 33.9
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.7e-47 192.6 433 35.3
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.3e-46 189.9 323 39.0
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 7.4e-46 189.1 283 43.1
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 4.9e-42 176.4 192 49.0
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 3.9e-39 166.8 491 31.4
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.1e-39 166.4 173 51.4
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.3e-38 163.3 132 65.2
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.3e-36 156.4 132 61.4
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.0e-34 152.1 248 41.5
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.4e-28 131.0 158 48.7
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.8e-26 123.6 85 70.6
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 7.2e-25 119.4 121 57.0
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.4e-23 115.2 79 74.7
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.1e-22 112.1 157 40.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-17 95.5 121 50.4
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 4.8e-13 80.1 119 46.2
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 3.1e-12 77.4 153 41.2
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 4.5e-11 73.6 130 43.1
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.1e-09 68.9 51 64.7
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.9e-09 68.2 74 48.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.5e-09 67.8 63 52.4
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.3e-07 61.2 76 47.4
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 8.8e-07 59.3 42 66.7
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 4.4e-06 57.0 107 38.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 7.5e-06 56.2 36 66.7
Lalb_Chr02g0151451 Lupinus albus HOM05D002054 ORTHO05D005362 9.7e-06 55.8 146 29.5


User provided reference genes

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