Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0293200 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.4e-150 536.2 260 100.0
Zm00001eb167580 Zea mays HOM05D011330 ORTHO05D013903 6.1e-69 265.0 234 58.1
Os11g0594600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 2.9e-63 246.1 230 56.1
Os04g0317300 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.9e-38 163.7 231 46.3
Os04g0329500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 5.5e-38 162.2 231 45.9
Os11g0595100 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 2.3e-36 156.8 219 43.8
Os04g0316800 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 2.7e-32 143.3 233 44.6
Os11g0594500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 9.2e-25 118.2 239 38.1
Zm00001eb114820 Zea mays HOM05D011330 ORTHO05D013903 1.2e-13 81.3 170 34.1
Os06g0148600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D000074 6.2e-13 79.0 126 39.7
RcHm_v2.0_Chr4g0393001 Rosa chinensis HOM05D007346 ORTHO05D009044 8.0e-13 78.6 235 30.2
Os07g0499900 Oryza sativa ssp. japonica HOM05D033386 ORTHO05D037243 3.1e-12 76.6 98 41.8
Os02g0159800 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 3.4e-11 73.2 234 29.9
Thecc.02G045200 Theobroma cacao HOM05D007346 ORTHO05D009044 2.2e-10 70.5 235 30.6
Os12g0585300 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 3.7e-10 69.7 194 33.5
Os06g0148700 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 6.4e-10 68.9 126 36.5
Os06g0148900 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 3.2e-09 66.6 118 36.4
Haze_02115 Corylus avellana HOM05D007346 ORTHO05D009044 9.2e-09 65.1 214 29.4
Haze_02114 Corylus avellana HOM05D007346 ORTHO05D009044 1.6e-08 64.3 217 29.0
Peaxi162Scf00111g00720 Petunia axillaris HOM05D000151 ORTHO05D000074 2.1e-08 63.9 232 26.3
arahy.Tifrunner.gnm1.ann1.PYC0TU Arachis hypogaea HOM05D000151 ORTHO05D000074 2.7e-08 63.5 212 29.2
Cfa005319 Carpinus fangiana HOM05D007346 ORTHO05D009044 4.6e-08 62.8 214 30.4
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 4.6e-08 62.8 214 31.3
TWI31G0339 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 7.8e-08 62.0 232 27.6
FAN12G2737 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.0e-07 60.1 214 28.0
TWI23G0143 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.0e-07 60.1 241 26.6
FAN14G0979 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.9e-07 59.7 225 27.1
Os01g0673300 Oryza sativa ssp. japonica HOM05D010462 ORTHO05D012694 3.9e-07 59.7 203 28.1
RcHm_v2.0_Chr4g0393471 Rosa chinensis HOM05D007346 ORTHO05D009044 3.9e-07 59.7 212 29.2
FvH4_4g01590 Fragaria vesca HOM05D007346 ORTHO05D009044 5.0e-07 59.3 214 28.0
Actinidia06437 Actinidia chinensis HOM05D000151 ORTHO05D000074 6.6e-07 58.9 209 27.8
TAR636G0604 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.6e-07 58.5 221 26.7
Manes.04G069000 Manihot esculenta HOM05D000151 ORTHO05D000074 1.9e-06 57.4 224 28.1
TWI31G0298 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.9e-06 57.4 238 27.7
COL.COLO4_20080 Corchorus olitorius HOM05D000039 ORTHO05D000370 2.5e-06 57.0 145 30.3
Zm00001eb167860 Zea mays HOM05D010462 ORTHO05D012694 3.3e-06 56.6 189 30.7
Aqoxy2G00555 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.3e-06 56.2 248 26.6
Oeu030066.1 Olea europaea HOM05D000151 ORTHO05D000074 4.3e-06 56.2 209 28.7
Os12g0592500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 5.6e-06 55.8 59 44.1
QL04p019119 Quercus lobata HOM05D000151 ORTHO05D000074 7.3e-06 55.5 136 31.6
FAN24G2319 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.5e-06 55.1 210 29.0


User provided reference genes

Program Settings