Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 6.2e-113 411.0 237 100.0
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 1.3e-46 190.7 242 55.8
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 6.4e-25 118.6 186 46.2
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 2.3e-22 110.2 166 53.6
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 6.6e-22 108.6 180 43.9
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 8.6e-22 108.2 155 47.1
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 5.6e-21 105.5 186 40.9
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 5.6e-21 105.5 154 46.1
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 1.2e-20 104.4 205 39.5
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 2.1e-20 103.6 159 50.9
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 3.6e-20 102.8 196 45.4
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 4.7e-20 102.4 224 41.1
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 8.1e-20 101.7 205 37.6
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.8e-19 100.5 195 46.7
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 2.4e-19 100.1 164 48.8
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 4.0e-19 99.4 159 49.7
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 5.2e-19 99.0 194 39.2
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 6.8e-19 98.6 248 37.1
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 6.8e-19 98.6 147 44.2
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 8.9e-19 98.2 141 54.6
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 8.9e-19 98.2 190 42.6
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.2e-18 97.8 194 42.8
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.5e-18 97.4 202 45.0
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 1.5e-18 97.4 189 41.3
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 1.5e-18 97.4 200 42.5
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 2.0e-18 97.1 150 50.7
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 5.8e-18 95.5 184 38.6
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 5.8e-18 95.5 212 40.1
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.3e-17 94.4 196 43.4
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.3e-17 94.4 191 41.4
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.7e-17 94.0 150 51.3
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 2.2e-17 93.6 139 46.0
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 2.2e-17 93.6 194 39.2
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 2.9e-17 93.2 124 56.5
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 2.9e-17 93.2 198 41.9
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 2.9e-17 93.2 162 40.1
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 3.8e-17 92.8 107 48.6
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 4.9e-17 92.4 177 45.8
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 4.9e-17 92.4 152 45.4
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 6.4e-17 92.0 189 41.8
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 6.4e-17 92.0 197 44.2
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 6.4e-17 92.0 196 43.4
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 6.4e-17 92.0 212 41.5
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 8.4e-17 91.7 118 57.6
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 8.4e-17 91.7 153 47.1
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 1.1e-16 91.3 171 45.0
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.9e-16 90.5 115 46.1
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 1.9e-16 90.5 196 41.8
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 2.4e-16 90.1 181 35.4
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 3.2e-16 89.7 70 62.9
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 4.2e-16 89.4 138 42.8
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 4.2e-16 89.4 103 49.5
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 7.1e-16 88.6 141 42.6
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 9.3e-16 88.2 186 45.7
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 9.3e-16 88.2 191 42.9
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 9.3e-16 88.2 104 49.0
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 9.3e-16 88.2 176 38.6
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 9.3e-16 88.2 215 39.1
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 1.6e-15 87.4 147 49.0
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 2.7e-15 86.7 105 49.5
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.7e-15 86.7 101 64.4
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 3.5e-15 86.3 162 38.3
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 4.6e-15 85.9 102 46.1
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 4.6e-15 85.9 193 42.0
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 4.6e-15 85.9 69 63.8
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 6.0e-15 85.5 214 40.2
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 7.8e-15 85.1 229 32.3
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 1.0e-14 84.7 175 38.9
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 1.0e-14 84.7 148 48.6
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 1.0e-14 84.7 168 37.5
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 1.3e-14 84.3 166 47.6
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 1.7e-14 84.0 184 35.9
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 2.3e-14 83.6 185 36.2
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 5.1e-14 82.4 175 37.7
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 5.1e-14 82.4 175 37.7
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.1e-13 81.3 179 41.3
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 1.1e-13 81.3 198 35.9
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 1.5e-13 80.9 124 53.2
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 1.9e-13 80.5 187 36.9
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 2.5e-13 80.1 91 52.7
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 5.6e-13 79.0 241 35.3
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 7.3e-13 78.6 206 37.4
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 7.3e-13 78.6 144 47.2
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 9.6e-13 78.2 187 35.3
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.3e-12 77.8 206 37.4
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 1.3e-12 77.8 107 50.5
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 1.6e-12 77.4 197 34.0
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 1.6e-12 77.4 170 39.4
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 2.1e-12 77.0 197 37.6
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 3.6e-12 76.3 138 39.1
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.6e-12 76.3 187 35.3
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 4.8e-12 75.9 200 32.0
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 6.2e-12 75.5 196 38.3
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 6.2e-12 75.5 246 35.0
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 8.1e-12 75.1 204 32.8
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 1.1e-11 74.7 199 34.2
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 1.4e-11 74.3 180 35.0
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 1.4e-11 74.3 185 36.2
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 1.8e-11 73.9 190 37.9
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 4.0e-11 72.8 194 37.1
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 9.0e-11 71.6 163 39.3
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 1.5e-10 70.9 185 35.1
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 5.8e-10 68.9 150 40.7
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 7.6e-10 68.6 102 42.2
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 2.4e-08 63.5 118 52.5
QL05p035112 Quercus lobata HOM05D005915 ORTHO05D007239 4.6e-07 59.3 34 76.5
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 1.0e-06 58.2 125 38.4
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 6.6e-06 55.5 94 38.3
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 6.6e-06 55.5 148 31.8


User provided reference genes

Program Settings