Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 7.9e-277 956.4 470 100.0
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 9.2e-225 783.5 465 82.6
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 2.1e-221 772.3 465 82.2
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 2.5e-169 599.4 461 63.3
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 4.2e-169 598.6 418 65.8
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 2.7e-168 595.9 428 65.7
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 7.9e-168 594.3 414 68.1
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 1.0e-167 594.0 413 66.8
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 2.3e-167 592.8 416 66.3
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 8.7e-167 590.9 451 63.9
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 1.9e-166 589.7 455 62.6
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 4.3e-166 588.6 455 62.6
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 1.6e-165 586.6 414 66.7
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 2.1e-165 586.3 408 66.9
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 2.1e-165 586.3 417 65.2
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 2.1e-165 586.3 420 65.2
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 2.8e-165 585.9 420 66.0
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 8.2e-165 584.3 409 67.0
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 2.4e-164 582.8 419 65.9
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 6.9e-164 581.3 472 60.6
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 6.9e-164 581.3 411 65.9
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 6.9e-164 581.3 413 66.8
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 9.0e-164 580.9 417 65.7
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 1.2e-163 580.5 418 64.4
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 2.0e-163 579.7 417 65.0
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 2.6e-163 579.3 411 65.7
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 3.4e-163 578.9 414 66.4
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 3.4e-163 578.9 449 61.7
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 4.5e-163 578.6 426 65.5
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 5.8e-163 578.2 455 61.8
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 7.6e-163 577.8 469 61.0
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 1.0e-162 577.4 419 64.9
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 1.3e-162 577.0 418 64.8
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.3e-162 577.0 411 65.5
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 1.7e-162 576.6 418 63.9
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 2.2e-162 576.2 427 64.6
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 2.2e-162 576.2 459 61.0
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 2.2e-162 576.2 463 60.7
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 2.2e-162 576.2 412 65.0
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 2.2e-162 576.2 412 65.0
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 8.4e-162 574.3 415 64.3
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 8.4e-162 574.3 414 64.5
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.1e-161 573.9 411 65.2
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 1.9e-161 573.2 413 65.1
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 4.2e-161 572.0 456 60.5
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 5.5e-161 571.6 418 63.2
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 5.5e-161 571.6 421 63.2
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 7.1e-161 571.2 416 63.9
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 9.3e-161 570.9 457 59.5
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 9.3e-161 570.9 433 61.4
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 1.6e-160 570.1 419 63.5
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 2.1e-160 569.7 415 66.3
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 2.1e-160 569.7 448 62.1
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 3.5e-160 568.9 420 63.3
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 3.5e-160 568.9 421 63.4
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 4.6e-160 568.5 413 64.9
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 6.0e-160 568.2 420 63.3
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 1.0e-159 567.4 412 64.3
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 1.0e-159 567.4 416 62.7
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 1.0e-159 567.4 416 64.9
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 2.3e-159 566.2 413 63.7
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 2.3e-159 566.2 412 62.9
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 3.9e-159 565.5 413 64.6
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 3.9e-159 565.5 413 64.6
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 3.9e-159 565.5 469 59.1
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 3.9e-159 565.5 459 59.5
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 5.1e-159 565.1 413 63.0
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 5.1e-159 565.1 413 64.4
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 8.7e-159 564.3 413 63.7
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 8.7e-159 564.3 413 66.1
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 1.1e-158 563.9 421 63.4
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 1.5e-158 563.5 471 59.4
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 1.9e-158 563.1 420 64.0
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 2.5e-158 562.8 413 64.2
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 5.7e-158 561.6 421 62.5
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 2.2e-157 559.7 413 63.9
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 4.8e-157 558.5 412 65.3
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 8.2e-157 557.8 422 63.5
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 1.5e-155 553.5 411 63.7
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 1.5e-155 553.5 424 61.3
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 2.6e-155 552.7 416 62.7
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 2.3e-151 539.7 392 64.8
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 7.4e-150 534.6 403 63.3
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 9.7e-150 534.3 460 57.6
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 4.8e-149 531.9 441 59.2
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 6.3e-149 531.6 512 55.5
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 8.5e-146 521.2 360 66.4
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 5.5e-145 518.5 470 54.3
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 5.0e-138 495.4 338 66.6
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 3.9e-135 485.7 389 60.2
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 7.7e-123 444.9 460 51.7
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 4.7e-120 435.6 321 64.5
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 1.4e-119 434.1 422 52.4
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 3.1e-116 422.9 405 52.1
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 4.1e-116 422.5 467 49.3
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 2.3e-114 416.8 293 64.8
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 8.6e-114 414.8 422 51.9
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 4.9e-109 399.1 433 49.7
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 4.1e-108 396.0 420 51.2
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 6.2e-88 328.9 418 42.8
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 2.9e-61 240.4 203 57.6
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 2.9e-61 240.4 203 57.6
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 4.6e-59 233.0 177 61.6
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 2.0e-54 217.6 187 54.5
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 1.9e-44 184.5 159 56.6
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 8.5e-21 105.9 117 51.3
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 1.2e-14 85.5 61 57.4


User provided reference genes

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