Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.0e-38 162.9 81 100.0
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.2e-31 139.4 79 84.8
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.0e-31 138.7 79 83.5
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 4.4e-26 120.9 75 76.0
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.2e-25 118.6 70 74.3
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.9e-25 118.2 72 77.8
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.7e-25 117.9 70 74.3
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 8.3e-25 116.7 70 75.7
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.1e-24 116.3 71 73.2
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.4e-24 115.9 71 73.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.8e-24 115.5 74 71.6
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.4e-24 115.2 77 67.5
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.4e-24 115.2 77 70.1
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 5.4e-24 114.0 76 68.4
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 7.0e-24 113.6 77 71.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 7.0e-24 113.6 70 71.4
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 9.2e-24 113.2 75 69.3
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.2e-23 112.8 70 72.9
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.0e-23 112.1 72 72.2
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 2.7e-23 111.7 72 73.6
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.5e-23 111.3 75 65.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 4.6e-23 110.9 82 62.2
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 7.8e-23 110.2 69 71.0
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 7.8e-23 110.2 69 71.0
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.3e-22 109.4 69 71.0
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.3e-22 109.4 69 72.5
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 1.3e-22 109.4 70 71.4
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 1.3e-22 109.4 70 71.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.3e-22 109.4 67 76.1
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.7e-22 109.0 68 72.1
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 1.7e-22 109.0 69 72.5
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 2.3e-22 108.6 77 66.2
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 2.3e-22 108.6 69 71.0
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.3e-22 108.6 71 69.0
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.3e-22 108.6 71 69.0
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.9e-22 107.8 73 69.9
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.9e-22 107.8 69 71.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 3.9e-22 107.8 70 70.0
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 6.6e-22 107.1 67 71.6
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 6.6e-22 107.1 71 67.6
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 6.6e-22 107.1 68 70.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.5e-21 105.9 71 66.2
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.5e-21 105.9 66 69.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.9e-21 105.5 76 61.8
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 3.3e-21 104.8 78 65.4
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 4.3e-21 104.4 72 65.3
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 4.3e-21 104.4 65 73.8
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 5.6e-21 104.0 66 71.2
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 9.5e-21 103.2 66 71.2
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.2e-20 102.8 72 62.5
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.6e-20 102.4 72 65.3
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.6e-20 102.4 63 71.4
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.6e-20 102.4 63 68.3
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.6e-20 102.4 73 64.4
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 1.6e-20 102.4 68 69.1
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.1e-20 102.1 69 65.2
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.1e-20 102.1 76 61.8
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 4.7e-20 100.9 68 67.6
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 6.2e-20 100.5 67 65.7
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 6.2e-20 100.5 56 78.6
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 8.0e-20 100.1 79 58.2
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 8.0e-20 100.1 73 60.3
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.8e-19 99.0 76 63.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.0e-19 97.8 71 60.6
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 5.2e-19 97.4 67 61.2
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 8.9e-19 96.7 74 62.2
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 5.8e-18 94.0 70 57.1
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 5.8e-18 94.0 70 57.1
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.1e-16 89.7 83 54.2
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.9e-16 89.0 72 55.6
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 2.4e-16 88.6 72 55.6
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.4e-16 88.6 72 55.6
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.0e-15 85.5 54 63.0
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.0e-15 85.5 70 61.4
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.7e-15 85.1 54 63.0
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.5e-15 84.7 54 61.1
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.8e-15 83.6 72 52.8
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.0e-14 83.2 61 62.3
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.3e-14 82.0 46 71.7
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 3.0e-14 81.6 55 60.0
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 8.6e-14 80.1 69 52.2
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.5e-13 79.3 54 61.1
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.5e-13 79.3 49 69.4
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.5e-13 79.3 115 39.1
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.9e-13 79.0 47 66.0
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.9e-13 79.0 47 66.0
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.9e-13 79.0 74 48.6
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.3e-13 77.8 54 59.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 5.6e-13 77.4 68 52.9
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 5.6e-13 77.4 71 50.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 7.3e-13 77.0 48 64.6
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 7.3e-13 77.0 53 60.4
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 7.3e-13 77.0 52 59.6
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 7.3e-13 77.0 52 59.6
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 7.3e-13 77.0 52 59.6
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 7.3e-13 77.0 76 50.0
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 7.3e-13 77.0 70 52.9
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.2e-12 76.3 71 52.1
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.6e-12 75.9 46 65.2
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.6e-12 75.9 46 65.2
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.8e-12 75.1 53 56.6
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.6e-12 74.7 78 44.9
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 4.7e-12 74.3 48 60.4
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 6.2e-12 73.9 82 48.8
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.2e-12 73.9 41 70.7
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 8.1e-12 73.6 62 54.8
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-11 73.2 46 63.0
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 2.3e-11 72.0 42 73.8
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 2.3e-11 72.0 54 55.6
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.5e-10 69.3 52 61.5
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 2.0e-10 68.9 49 61.2
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 2.6e-10 68.6 47 61.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.4e-10 67.8 41 63.4
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 7.5e-10 67.0 54 55.6
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 9.9e-10 66.6 39 66.7
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.3e-09 66.2 50 58.0
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.3e-09 66.2 50 60.0
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.3e-09 66.2 47 57.4
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.2e-09 65.5 43 65.1
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 3.7e-09 64.7 43 62.8
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 6.4e-09 63.9 62 45.2
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 1.4e-08 62.8 44 56.8
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.4e-08 62.8 41 56.1
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.7e-07 58.5 163 28.2
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.5e-07 58.2 48 45.8
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 3.5e-07 58.2 39 61.5
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 3.0e-06 55.1 64 42.2


User provided reference genes

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