Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 4.5e-107 391.3 208 100.0
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.0e-75 286.2 203 74.9
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.5e-46 190.3 204 52.0
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.9e-45 186.0 202 51.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.4e-44 183.7 202 52.5
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.9e-44 183.3 202 50.5
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.4e-44 181.8 202 51.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 5.4e-44 181.8 204 52.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.1e-43 179.9 214 50.0
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.0e-42 177.6 201 48.3
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.3e-42 177.2 201 48.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.3e-42 177.2 212 49.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.7e-42 176.8 203 50.7
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 8.6e-42 174.5 198 52.5
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.6e-40 170.2 204 45.1
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.1e-40 169.9 195 49.7
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.1e-40 169.9 167 54.5
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.8e-40 169.5 206 50.5
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.7e-40 168.7 209 48.3
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 8.1e-40 167.9 205 47.8
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.1e-39 167.5 204 48.0
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.4e-39 167.2 196 48.5
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.8e-39 166.8 201 44.8
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.3e-39 166.4 206 47.1
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.0e-39 165.6 191 47.6
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 5.2e-39 165.2 177 50.8
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 8.9e-39 164.5 200 44.5
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.2e-38 164.1 202 48.0
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.2e-38 164.1 205 48.3
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.5e-38 163.7 200 46.5
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.5e-38 163.7 199 48.7
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.5e-38 163.7 203 46.3
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.5e-38 163.7 204 45.1
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.0e-38 163.3 199 48.2
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.0e-38 163.3 199 46.7
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.0e-38 163.3 166 54.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 2.6e-38 162.9 166 54.8
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.6e-38 162.9 203 45.8
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.4e-38 162.5 202 45.5
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.4e-38 162.5 202 46.5
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 5.8e-38 161.8 209 46.4
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.3e-37 160.6 202 44.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.2e-37 159.8 199 47.2
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.2e-37 159.8 199 47.2
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.2e-37 159.8 202 46.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.9e-37 158.7 167 50.9
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 4.9e-37 158.7 167 47.9
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 8.3e-37 157.9 195 46.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.1e-36 157.5 207 44.9
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.4e-36 157.1 211 45.0
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.9e-36 156.8 206 45.1
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.9e-36 156.8 203 46.8
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.9e-36 156.8 210 43.8
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.9e-36 156.8 197 46.2
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.4e-36 156.4 208 43.8
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.4e-36 156.4 206 43.7
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.1e-36 155.6 206 44.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 7.1e-36 154.8 202 46.5
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.1e-36 154.8 202 44.1
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.2e-35 154.1 198 44.9
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.7e-35 152.9 166 48.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.7e-35 152.9 197 46.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.5e-35 152.5 207 42.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 3.5e-35 152.5 205 43.4
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 6.0e-35 151.8 208 41.8
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 7.8e-35 151.4 208 45.7
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 7.8e-35 151.4 205 42.4
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.0e-34 151.0 208 43.8
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.3e-34 150.6 221 41.6
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.7e-34 150.2 198 42.9
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.3e-34 149.8 202 44.6
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 3.0e-34 149.4 188 43.6
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.9e-34 149.1 200 42.0
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.9e-34 149.1 199 44.2
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 5.1e-34 148.7 199 45.7
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.1e-34 148.7 210 42.9
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 6.6e-34 148.3 202 41.6
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 6.6e-34 148.3 202 41.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 6.6e-34 148.3 203 41.9
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 6.6e-34 148.3 202 40.1
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 8.6e-34 147.9 210 42.4
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.1e-33 147.5 207 43.0
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.1e-33 147.5 202 42.1
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.5e-33 147.1 214 40.2
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.5e-33 147.1 211 41.7
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.9e-33 146.7 210 43.8
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-33 146.4 207 42.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 4.3e-33 145.6 200 41.0
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 4.3e-33 145.6 200 41.5
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.6e-33 145.2 224 43.8
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 9.5e-33 144.4 206 39.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.2e-32 144.1 160 50.6
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.6e-32 143.7 202 41.1
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.1e-32 143.3 207 42.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 3.6e-32 142.5 209 40.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.2e-30 137.5 205 40.0
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.0e-30 136.7 205 40.0
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.0e-30 136.7 205 40.0
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.4e-30 136.0 205 39.5
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 9.9e-30 134.4 206 38.8
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 9.9e-30 134.4 204 40.2
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.2e-29 133.3 202 38.6
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 2.9e-29 132.9 131 52.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 8.4e-29 131.3 232 36.6
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.4e-28 130.6 198 38.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.9e-28 130.2 138 48.6
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.4e-28 129.8 209 38.8
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.2e-28 129.4 232 36.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 4.2e-28 129.0 160 46.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.1e-27 126.7 208 41.8
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.1e-27 126.7 205 42.4
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 4.6e-27 125.6 204 37.7
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 4.6e-27 125.6 160 45.6
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.6e-27 125.6 160 45.6
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 2.5e-25 119.8 123 56.9
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.0e-23 112.5 121 53.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.4e-20 104.0 82 58.5
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 3.5e-19 99.4 198 37.4
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.3e-18 96.7 201 33.3
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.3e-18 96.7 201 33.3
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.0e-18 96.3 201 33.3
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 5.1e-18 95.5 201 32.8
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 5.1e-18 95.5 176 36.9
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 5.6e-17 92.0 119 45.4
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-16 90.5 196 36.2
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 5.3e-15 85.5 148 33.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 9.9e-14 81.3 152 34.9
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.2e-13 80.1 199 29.1
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 4.9e-13 79.0 174 32.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 7.1e-12 75.1 194 28.9
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.8e-10 70.5 213 28.6
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 5.1e-10 68.9 95 41.1
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.1e-09 67.8 198 27.3
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 7.4e-09 65.1 100 33.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 9.6e-09 64.7 184 29.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.8e-07 60.5 90 34.4
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.6e-06 56.6 83 36.1


User provided reference genes

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