Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 0.0e+00 1183.7 642 100.0
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 0.0e+00 1076.2 644 87.3
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.7e-205 719.9 653 60.6
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.0e-202 710.7 647 60.0
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 2.5e-201 706.1 643 58.9
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-200 703.7 647 57.7
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.1e-200 703.0 648 59.4
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 2.1e-200 703.0 650 60.0
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 4.8e-200 701.8 657 57.8
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.1e-199 699.1 647 58.0
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 3.1e-199 699.1 650 59.7
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 5.3e-199 698.4 646 59.0
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 5.3e-199 698.4 650 59.5
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 9.0e-199 697.6 635 62.4
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.5e-198 696.8 647 58.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.5e-198 696.8 648 59.1
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 2.6e-198 696.0 644 58.7
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 4.5e-198 695.3 657 58.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.0e-197 694.1 644 58.5
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 2.2e-197 693.0 647 58.6
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 3.8e-197 692.2 659 57.7
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.4e-196 690.3 656 58.5
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.9e-196 689.9 650 58.9
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.5e-196 689.5 646 58.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.5e-196 689.5 646 58.0
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 2.5e-196 689.5 649 58.4
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 3.2e-196 689.1 656 58.4
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.2e-196 689.1 655 58.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 5.5e-196 688.3 643 57.9
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 7.2e-196 688.0 654 58.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 9.3e-196 687.6 648 58.6
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 9.3e-196 687.6 648 58.2
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 9.3e-196 687.6 638 59.2
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 2.1e-195 686.4 653 58.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 2.7e-195 686.0 650 58.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.3e-194 683.7 652 59.2
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.8e-194 683.3 649 56.9
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 5.1e-194 681.8 645 58.1
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 6.7e-194 681.4 653 57.7
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.1e-193 680.6 646 58.4
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.5e-193 680.2 663 57.3
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.5e-193 679.5 648 57.9
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 3.3e-193 679.1 663 57.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 4.3e-193 678.7 663 55.8
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 9.7e-193 677.6 646 57.7
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.3e-192 677.2 647 57.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.6e-192 676.8 655 58.5
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 4.8e-192 675.2 644 57.8
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 6.3e-192 674.9 639 58.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 6.9e-191 671.4 649 56.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 9.1e-191 671.0 646 57.4
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 1.5e-190 670.2 645 55.8
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.4e-190 669.1 652 56.4
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 3.4e-190 669.1 637 59.2
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 5.9e-190 668.3 646 57.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 7.7e-190 667.9 656 56.4
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 7.7e-190 667.9 637 58.1
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.0e-189 667.5 633 58.1
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.0e-189 667.5 632 58.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 2.9e-189 666.0 654 56.7
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.5e-189 664.8 646 55.4
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.9e-188 663.3 635 59.2
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 3.2e-188 662.5 651 56.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.2e-188 662.1 649 56.2
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.7e-187 659.4 652 55.8
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.7e-187 659.4 644 56.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 6.1e-187 658.3 651 55.9
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.3e-186 656.4 651 55.8
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.0e-186 656.0 647 57.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 5.1e-186 655.2 649 55.9
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 6.7e-186 654.8 653 56.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.1e-185 654.1 650 56.2
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.5e-185 653.7 649 55.8
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.0e-185 653.3 646 55.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 3.3e-185 652.5 650 56.2
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.4e-185 652.1 654 57.2
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 4.4e-185 652.1 660 55.6
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 4.4e-185 652.1 649 55.6
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 7.4e-185 651.4 657 55.6
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 9.7e-185 651.0 655 57.3
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 9.7e-185 651.0 651 55.9
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.3e-184 650.6 646 54.8
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.8e-184 649.4 638 56.7
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.8e-184 649.4 650 56.0
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 4.8e-184 648.7 648 55.7
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 8.2e-184 647.9 643 56.0
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.1e-183 647.5 647 56.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 6.9e-183 644.8 650 55.8
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 6.9e-183 644.8 652 56.7
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 6.9e-183 644.8 651 56.8
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 9.1e-183 644.4 651 56.8
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 9.1e-183 644.4 643 55.7
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 1.2e-182 644.0 654 56.6
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.5e-182 643.7 648 54.8
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.0e-182 643.3 651 56.4
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.6e-182 642.9 653 56.5
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.0e-181 641.0 643 57.1
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.2e-181 639.8 580 59.0
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 3.8e-181 639.0 654 54.9
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 6.5e-181 638.3 656 54.7
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.5e-180 636.3 652 56.1
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 5.5e-180 635.2 651 56.4
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.0e-178 630.9 650 55.7
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.8e-178 630.2 582 58.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 3.9e-178 629.0 654 54.7
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.7e-176 623.6 649 54.2
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 3.7e-176 622.5 649 54.2
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 4.1e-175 619.0 655 52.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 7.0e-175 618.2 654 53.2
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.7e-173 613.6 654 53.7
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.9e-165 586.3 643 50.9
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.5e-164 583.9 634 54.3
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.5e-158 562.8 595 53.8
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.1e-155 552.0 628 51.9
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.2e-152 543.5 648 48.9
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.8e-151 540.4 544 55.5
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.3e-149 534.3 655 49.6
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.1e-139 500.4 641 47.0
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.1e-135 488.0 549 51.4
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 4.6e-134 482.6 671 43.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 2.3e-133 480.3 668 43.9
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 7.8e-126 455.3 626 44.7
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 4.7e-115 419.5 633 44.4
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 4.6e-110 402.9 662 40.2
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.6e-94 351.3 348 54.9
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.4e-82 311.6 389 47.0
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 5.3e-82 309.7 328 52.7
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.1e-79 302.0 295 56.3
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 5.7e-76 289.7 241 58.1
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 5.0e-40 170.2 570 27.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 1.9e-31 141.7 118 57.6
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 4.0e-29 134.0 117 59.0
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 3.0e-16 91.3 87 58.6
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 5.8e-12 77.0 114 43.9
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.1e-10 72.8 44 77.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.7e-09 68.2 85 48.2


User provided reference genes

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