Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 3.8e-182 641.3 319 100.0
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.8e-131 473.0 326 75.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.4e-80 303.9 284 53.2
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.9e-80 303.5 286 53.1
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 4.2e-80 302.4 284 52.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 9.4e-80 301.2 288 52.4
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 2.1e-79 300.1 305 51.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.7e-79 299.7 292 52.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.6e-79 298.9 288 51.4
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 6.1e-79 298.5 288 52.1
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.4e-78 297.4 291 50.9
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.8e-78 297.0 295 51.9
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 3.0e-78 296.2 291 50.9
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 3.9e-78 295.8 288 51.0
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 2.5e-77 293.1 292 50.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.5e-77 293.1 297 51.2
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 7.4e-77 291.6 288 47.9
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 7.4e-77 291.6 288 47.9
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 7.4e-77 291.6 288 49.7
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.4e-77 291.6 297 49.8
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.3e-76 290.8 293 51.2
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-76 290.8 297 50.8
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.7e-76 290.4 297 50.8
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.8e-76 289.7 295 50.5
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.8e-76 289.7 295 50.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.8e-76 288.9 283 51.6
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 6.3e-76 288.5 302 48.7
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 8.2e-76 288.1 293 49.1
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.4e-75 287.3 300 49.7
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.4e-75 287.3 300 51.0
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.4e-75 287.3 294 49.7
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.8e-75 287.0 318 47.8
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.8e-75 287.0 300 50.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.8e-75 287.0 295 50.8
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.8e-75 287.0 287 51.2
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 3.1e-75 286.2 297 48.5
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.1e-75 286.2 300 49.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 6.9e-75 285.0 315 50.2
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.9e-75 285.0 300 50.0
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-74 284.3 293 48.8
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-74 284.3 293 48.8
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.2e-74 284.3 294 48.6
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 4.5e-74 282.3 310 49.4
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 5.9e-74 282.0 290 48.6
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 5.9e-74 282.0 297 50.5
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 7.7e-74 281.6 297 49.2
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.7e-73 280.4 295 48.8
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.7e-73 280.4 298 50.7
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.1e-72 277.7 300 47.7
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 3.2e-72 276.2 280 48.6
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.2e-72 276.2 275 49.1
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.2e-71 274.2 287 48.4
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 2.1e-71 273.5 291 49.5
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.0e-70 271.2 305 46.9
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 5.1e-70 268.9 281 48.8
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.1e-70 268.9 301 48.2
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.7e-70 268.5 273 48.7
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.1e-69 267.7 286 49.0
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.1e-69 267.7 298 48.0
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.1e-69 267.7 287 46.3
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.5e-69 267.3 279 48.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.0e-69 266.9 286 46.9
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.0e-69 266.9 298 46.6
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.6e-69 266.5 340 44.1
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 2.6e-69 266.5 320 45.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 3.3e-69 266.2 282 49.6
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 3.3e-69 266.2 282 49.6
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 3.3e-69 266.2 282 49.6
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.3e-69 266.2 291 46.4
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 4.4e-69 265.8 282 50.4
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 7.4e-69 265.0 274 50.4
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 7.4e-69 265.0 282 47.5
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.3e-68 264.2 271 48.7
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.2e-68 263.5 287 46.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 4.8e-68 262.3 281 48.4
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.3e-68 261.9 274 48.2
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 6.3e-68 261.9 293 46.1
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 6.3e-68 261.9 282 48.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 8.2e-68 261.5 287 45.6
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.4e-67 260.8 299 46.5
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.8e-67 260.4 267 50.6
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 2.4e-67 260.0 274 48.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.1e-67 259.2 289 46.4
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.6e-66 257.3 265 47.9
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.6e-66 256.5 281 48.4
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 4.5e-66 255.8 273 49.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.7e-65 253.8 240 53.8
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.9e-65 253.1 266 47.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.1e-64 251.1 292 44.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.5e-64 248.8 254 48.8
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.6e-63 246.1 284 45.8
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.0e-62 244.6 276 46.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.0e-62 242.7 260 48.1
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.5e-61 240.7 227 54.6
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 2.6e-61 240.0 259 48.6
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.8e-60 235.7 278 43.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.2e-58 231.1 277 45.5
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.7e-58 229.9 207 55.1
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.7e-58 229.9 287 42.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 4.5e-58 229.2 221 51.6
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 5.0e-57 225.7 277 45.1
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.1e-56 224.6 222 49.1
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.5e-56 224.2 277 44.4
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.2e-55 221.1 290 42.4
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.6e-55 219.5 314 39.5
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.7e-55 219.2 221 51.1
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.2e-53 214.5 289 42.6
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 7.5e-53 211.8 220 48.2
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.5e-53 211.8 222 48.2
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 2.8e-52 209.9 276 42.8
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 8.3e-52 208.4 304 37.2
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.1e-51 208.0 289 41.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 5.4e-51 205.7 287 37.3
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 2.0e-50 203.8 295 37.6
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 2.9e-49 199.9 285 40.0
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 3.8e-49 199.5 234 47.9
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.7e-47 192.6 214 44.4
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 6.1e-47 192.2 286 38.1
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.0e-46 189.9 185 52.4
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.1e-43 181.4 278 39.2
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.4e-43 180.3 192 48.4
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.1e-43 179.5 289 36.7
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 7.0e-43 178.7 173 53.2
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 2.2e-36 157.1 171 48.0
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 2.0e-34 150.6 174 43.1
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 1.7e-33 147.5 247 37.7
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.0e-30 138.3 198 42.4
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 2.3e-30 137.1 122 51.6
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.4e-27 127.9 135 49.6
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.0e-25 121.7 132 47.7
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-25 121.3 109 56.0
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.5e-24 117.9 109 55.0
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 6.8e-22 109.0 118 46.6
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.2e-21 108.2 191 35.6
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 4.4e-21 106.3 370 25.9
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 6.4e-20 102.4 117 43.6
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 7.1e-19 99.0 88 52.3
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 7.3e-16 89.0 117 46.2
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.2e-15 88.2 101 43.6
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.0e-14 83.2 113 41.6
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 2.9e-12 77.0 199 29.1
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.2e-11 73.6 270 23.3
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 5.4e-11 72.8 96 41.7
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 4.6e-10 69.7 244 26.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.0e-09 68.6 273 25.6
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 8.6e-09 65.5 224 24.6
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 8.6e-09 65.5 240 25.8
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.1e-08 65.1 249 26.1
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.5e-08 64.7 262 25.6
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.5e-08 64.7 230 25.2
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 3.3e-08 63.5 72 45.8
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.3e-08 63.5 195 24.6
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 4.3e-08 63.2 155 29.7
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 5.6e-08 62.8 231 26.8
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 5.6e-08 62.8 237 25.3
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 5.6e-08 62.8 241 24.1
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 9.6e-08 62.0 153 27.5
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 1.2e-07 61.6 51 54.9
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 1.2e-07 61.6 51 54.9
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.6e-07 61.2 59 45.8
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.1e-07 60.8 234 25.6
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 2.8e-07 60.5 161 29.2
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.8e-07 60.5 195 26.2
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 2.8e-07 60.5 228 22.4
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.6e-07 60.1 241 26.1
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 3.6e-07 60.1 200 25.5
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 4.7e-07 59.7 209 25.4
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.2e-07 59.3 195 25.6
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.1e-06 58.5 147 26.5
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 1.4e-06 58.2 229 24.0
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.8e-06 57.8 161 27.3
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 1.8e-06 57.8 147 26.5
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 1.8e-06 57.8 233 24.5
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-06 57.4 225 24.4
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-06 57.4 225 24.4
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.4e-06 57.4 242 23.1
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 3.1e-06 57.0 240 24.2
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 3.1e-06 57.0 199 23.6
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.1e-06 57.0 242 23.6
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 4.0e-06 56.6 194 25.3
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 5.2e-06 56.2 186 24.2
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 5.2e-06 56.2 238 26.1
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 6.8e-06 55.8 196 25.5


User provided reference genes

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