Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0241300 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 1.5e-43 179.1 92 100.0
Zm00001eb414530 Zea mays HOM05D002570 ORTHO05D002689 2.1e-16 89.0 105 58.1
Zm00001eb071700 Zea mays HOM05D002570 ORTHO05D002689 1.4e-15 86.3 89 60.7
Os04g0603400 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 3.0e-15 85.1 93 60.2
Zm00001eb430390 Zea mays HOM05D002570 ORTHO05D002689 1.2e-14 83.2 67 70.1
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 6.6e-10 67.4 82 48.8
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.1e-09 66.6 56 64.3
Zm00001eb274770 Zea mays HOM05D002570 ORTHO05D002689 1.5e-09 66.2 99 45.5
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 2.5e-09 65.5 82 47.6
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 3.3e-09 65.1 61 62.3
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 3.3e-09 65.1 61 62.3
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 4.3e-09 64.7 53 64.2
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.3e-09 64.7 61 60.7
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.3e-09 64.7 61 60.7
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.3e-09 64.7 61 60.7
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 4.3e-09 64.7 61 60.7
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 4.3e-09 64.7 80 48.8
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.3e-09 64.7 82 47.6
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 5.6e-09 64.3 82 50.0
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 5.6e-09 64.3 82 47.6
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 5.6e-09 64.3 82 47.6
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 7.3e-09 63.9 82 48.8
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 9.5e-09 63.5 56 62.5
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 1.2e-08 63.2 53 62.3
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 1.6e-08 62.8 80 47.5
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.6e-08 62.8 61 59.0
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 1.6e-08 62.8 80 52.5
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.6e-08 62.8 76 46.1
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 2.1e-08 62.4 76 48.7
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 2.1e-08 62.4 53 64.2
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 2.1e-08 62.4 76 46.1
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 2.8e-08 62.0 74 48.6
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 2.8e-08 62.0 80 52.5
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.8e-08 62.0 80 52.5
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 2.8e-08 62.0 84 51.2
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 3.6e-08 61.6 77 45.5
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 3.6e-08 61.6 68 50.0
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 3.6e-08 61.6 93 44.1
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 3.6e-08 61.6 76 46.1
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 3.6e-08 61.6 71 53.5
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 4.7e-08 61.2 56 58.9
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 4.7e-08 61.2 73 50.7
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 6.1e-08 60.8 72 47.2
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 6.1e-08 60.8 77 50.6
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 6.1e-08 60.8 56 62.5
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 6.1e-08 60.8 56 58.9
Os04g0658200 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 8.0e-08 60.5 88 43.2
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.0e-07 60.1 93 46.2
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.0e-07 60.1 93 46.2
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 1.0e-07 60.1 76 48.7
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.0e-07 60.1 79 46.8
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 1.0e-07 60.1 56 58.9
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.0e-07 60.1 53 60.4
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.0e-07 60.1 80 50.0
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 1.4e-07 59.7 71 50.7
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 1.4e-07 59.7 71 50.7
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 1.8e-07 59.3 77 46.8
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 1.8e-07 59.3 68 48.5
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.8e-07 59.3 82 50.0
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 1.8e-07 59.3 93 43.0
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 1.8e-07 59.3 80 47.5
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 1.8e-07 59.3 73 49.3
unitig_8.g3045 Utricularia gibba HOM05D002570 ORTHO05D002689 1.8e-07 59.3 61 52.5
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 2.3e-07 58.9 56 58.9
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.3e-07 58.9 76 48.7
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.3e-07 58.9 79 50.6
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.3e-07 58.9 79 50.6
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 2.3e-07 58.9 74 51.4
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 2.3e-07 58.9 79 48.1
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 3.0e-07 58.5 59 57.6
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 4.0e-07 58.2 76 48.7
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 5.2e-07 57.8 62 59.7
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 6.8e-07 57.4 66 50.0
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 8.9e-07 57.0 56 57.1
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 2.0e-06 55.8 69 46.4
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 2.0e-06 55.8 76 43.4
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.6e-06 55.5 80 48.8
unitig_0.g1091 Utricularia gibba HOM05D000528 ORTHO05D001569 2.6e-06 55.5 56 55.4
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 3.4e-06 55.1 56 58.9
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.4e-06 55.1 80 43.8
Solyc06g068620.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 3.4e-06 55.1 56 55.4
Sopen06g025880 Solanum pennellii HOM05D002570 ORTHO05D002689 3.4e-06 55.1 56 55.4
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 3.4e-06 55.1 79 44.3
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.4e-06 54.7 92 44.6
Nitab4.5_0007120g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 4.4e-06 54.7 88 47.7
CAN.G1089.3 Capsicum annuum HOM05D002570 ORTHO05D002689 5.7e-06 54.3 56 55.4
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 5.7e-06 54.3 79 44.3
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 5.7e-06 54.3 79 44.3
Nitab4.5_0007120g0040 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.5e-06 53.9 92 46.7
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 7.5e-06 53.9 82 41.5
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 9.8e-06 53.5 90 43.3


User provided reference genes

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